3300009337: Microbial communities of water from Amazon river, Brazil - RCM17

Overview

Basic Information

• IMG/M Taxon OID: 3300009337
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126453 | Ga0103864
• Sample Name: Microbial communities of water from Amazon river, Brazil - RCM17
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34079647
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon river
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F004323	Metagenome / Metatranscriptome	443	Y
F013303	Metagenome / Metatranscriptome	272	Y
F037987	Metagenome / Metatranscriptome	167	Y
F040635	Metagenome / Metatranscriptome	161	Y
F044442	Metagenome / Metatranscriptome	154	Y
F058810	Metagenome / Metatranscriptome	134	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103864_1001599	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	994
Ga0103864_1002432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	846
Ga0103864_1002760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	808
Ga0103864_1003401	Not Available	739
Ga0103864_1006716	All Organisms → cellular organisms → Eukaryota → Sar	558
Ga0103864_1007189	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103864_1001599	Ga0103864_10015992	F013303	AVEGDTAFKKSSDLGGSQEVTIKKSKWNGSFLGSVNELFN*
Ga0103864_1002432	Ga0103864_10024322	F004323	MPLVGFRRREGRAAPAATFRSPVARDYLSRAFSDVFQAAAP
Ga0103864_1002534	Ga0103864_10025341	F037987	PGSTLRSNRDKWGMGVRHALFPELTFGALFSEAVSFPTPFSTASGVFGLVAGPSGDFHLADFE*
Ga0103864_1002760	Ga0103864_10027601	F000344	MRPRHPHAAESGVGKYTARESECVQACAAGKERVTNAHP
Ga0103864_1003401	Ga0103864_10034012	F058810	MLSAINTSIDTIVSAKQQFVKTFVTNEAVAKPLNTYIDAQASFAKDVAQSSVEFFTTVGSAITGFDYKKAFAVK*
Ga0103864_1004243	Ga0103864_10042431	F000237	YYLYLVKLHILFCHES*DTGSGENIYEDKSGTYIS*FYDAMLKEFQDA*Y*TLLVFMYFTEHHFNPSTVNYFFFER*NISELEEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*LVLLAILPITYNFYNSNNNYLPIIPMQSSLLQTGCFMLFMLSIYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDLIEHYGYQYTQTYLRKT
Ga0103864_1006716	Ga0103864_10067161	F040635	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRK
Ga0103864_1007189	Ga0103864_10071891	F044442	GNFIMLKFSNLTLAQKRFVVAAIESNTAYKKNPQITLKECAAIYYTLRDTRTGAKNEKIGYPNWLFNKNKVERGVYQLPVPTATELSDYQKELDAKLNPVVKAKAKVAKLAKAKTVKVKSAPAKKAEVTEDAMESSRLQKIIDESAVDEDVEDFNQILRANGIEI*