3300009324: Microbial communities of water from the North Atlantic ocean - ACM48

Overview

Basic Information

• IMG/M Taxon OID: 3300009324
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126435 | Ga0103846
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM48
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25148342
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F001971	Metagenome / Metatranscriptome	609	Y
F016277	Metagenome / Metatranscriptome	248	Y
F019233	Metagenome / Metatranscriptome	231	Y
F031118	Metagenome / Metatranscriptome	183	N
F033052	Metagenome / Metatranscriptome	178	Y
F070150	Metagenome / Metatranscriptome	123	N
F093788	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103846_100991	All Organisms → cellular organisms → Bacteria	968
Ga0103846_101292	All Organisms → Viruses	886
Ga0103846_101866	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	786
Ga0103846_103310	All Organisms → Viruses	649
Ga0103846_103913	All Organisms → cellular organisms → Bacteria → Proteobacteria	611
Ga0103846_104243	Not Available	593

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103846_100991	Ga0103846_1009911	F031118	VVTQSRCEALAEILAEAEKLKMYRLDGSTYCEKCHNLVVRIQSVLEDVKVEDLSADDIEKIKAIKEKVIGEEVFAESSSILRNPKEWLGTLNE*
Ga0103846_101061	Ga0103846_1010611	F000237	AFL*FHAIIFLGISLSATHLSDLTLTVFANVF*SLINNIHKTYYIIFTNKHLNIDQLTRFMMLHYFTP*YYLYLIQMHVLFCHES*DSDSGETTYEDKTGTYLS*FYDAMLKEFQDG*Y*VLYIFVYFSLHHFNGGTVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLLYLVLIASLPLFYNFYNTFNKHVPAIPMQNSLLQTTAFILFMMSMYCAASILPCGRYYYEPEGGYVGNP*IKFSFQYIYLYLG*ILHHLDVLDHHIFQFSQTFIRKCSSYSMRTNLLRKTNSSKKVNRK
Ga0103846_101292	Ga0103846_1012924	F016277	LTYYINRQEGRYDETCDEYDTRHEAYAMMREYQVSDHGRAYYYLSTTPKENWID*
Ga0103846_101292	Ga0103846_1012926	F093788	LNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA*
Ga0103846_101866	Ga0103846_1018662	F033052	VINFLKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103846_103310	Ga0103846_1033102	F001971	MTYEEFIHKGTEFYMDMVRLVDIKLKHRMDFTDDEIEIKDYIMEFQKQVKINELRDKFQKCWEVDE*
Ga0103846_103913	Ga0103846_1039132	F019233	MATLNFIMPRDLKDGFCEREEKQHKVQHSWLPSGQTRAIFGDEIAIECYCKHCGQREWTQTSRFEFEMLQDYWKELR*
Ga0103846_104243	Ga0103846_1042432	F070150	MKLILAGIFAVALVYFLTANSVLQRVSYDIYECDHRTAGKIKLWFKKVETGERFEFTKDMQSKFLSIEDVSDNKVAFLDENAFFKLDLASLRLVRDEKGEVVFFTCKLNAFRM*