3300009323: Microbial communities of water from the North Atlantic ocean - ACM32

Overview

Basic Information

• IMG/M Taxon OID: 3300009323
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126434 | Ga0103845
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM32
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24520825
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	3
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F001583	Metagenome / Metatranscriptome	668	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005629	Metagenome / Metatranscriptome	394	Y
F033052	Metagenome / Metatranscriptome	178	Y
F047447	Metatranscriptome	149	Y
F056566	Metagenome / Metatranscriptome	137	N
F074364	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103845_100840	All Organisms → Viruses → Predicted Viral	1007
Ga0103845_102056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	736
Ga0103845_102372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4	700
Ga0103845_103782	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	591
Ga0103845_103984	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	580
Ga0103845_105177	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	530
Ga0103845_105272	Not Available	526
Ga0103845_105349	All Organisms → cellular organisms → Eukaryota → Sar	523
Ga0103845_105784	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103845_100840	Ga0103845_1008403	F056566	VIRLTIGLSRDGLNPITGTARVRWFNSPLQEYRHTHVSRRAILKMLWFSGDTSKGQWVNCHCLAS*
Ga0103845_102056	Ga0103845_1020562	F033052	LKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103845_102372	Ga0103845_1023721	F005629	MKKDIRNDSSSFYIRRTWTDFVGRTVKVDHVGPYMESQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD*
Ga0103845_103782	Ga0103845_1037821	F005505	LHHFNGGTVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYQGVF*LLLYLVLIASLPLFYNFYNTFNKHVPAIPMQNSLLQTTAFILFMMSMYCAASILPCGRYYYEPEGGYVGNP*IKFSFQYIYLYLG*ILHHLDVLDHHIFQFSQTFIRKCSSYSMRTNLLRKTNSSKKVNRKTFVK**
Ga0103845_103984	Ga0103845_1039841	F001583	LMVLSYMHILKKIYLKNYVTSESDG*MLGGYAFF*FHYIIALGISLSASHLSDLTLTIITNIF*SVFNNIYKTYYIIFTNKHLNVDQLTRLMILHYFTPWYYLYLVKLHVLFCHES*DTDSGENIYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFLHHFNGATINYFFFER*NISELDEVRFYGVAP
Ga0103845_105177	Ga0103845_1051771	F005505	VQHHRYFRPLMGVLVITPTHYEGLM*FVL*LLLLAILPIIYNFYNGYTRYVNAIPMQNSLLQTTFFIVFMMCIYCSASMLPCGRYYYEPEGGYVGNP*IKFSYQYIYVYMY*ILHHLDIIDHHIFQFSQTYMRKCSSYANRTLS*RKSSSSRKTR*
Ga0103845_105272	Ga0103845_1052721	F074364	VERVRGLIENVIGTARVNLDELERAEAAALEEFRTVSANLEATLRDLAALKVRLNDHVSDMSNCVLEEEVVMKTASSKVDRNTEMLETATKMCNTFKVEYEVATEGRNEERDLLRIIKTMAEKRMVRYRDANTESKYGDDYGAEY*
Ga0103845_105327	Ga0103845_1053272	F000155	AVAAANRYESMNEDDLLVSLESTPSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0103845_105349	Ga0103845_1053491	F047447	DYCIVALNTNEYETSRKTKEKDELIALNDDLANIVSSLTNEVKGLESSIAEMRKQMKRAGEDRELENKAFMETVANQKATQNFLQSALNILKGFYDKASLVQKKADQKVAAGQAPPPGFKSYEKNAASGGVMGMMSGIINDAKAMEAEAIRGEEDAQKTYESFVKDTNMSIEMK
Ga0103845_105784	Ga0103845_1057841	F056566	IVIRLTIGLSHDGLNPITGTARVRWFNSPLQEYRHTHVSRRAILKMLWFSGDTSKGQWVNCHCLAS*