3300009317: Microbial communities of water from the North Atlantic ocean - ACM33

Overview

Basic Information

• IMG/M Taxon OID: 3300009317
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126417 | Ga0103828
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM33
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7932201
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005495	Metagenome / Metatranscriptome	399	Y
F047990	Metagenome / Metatranscriptome	149	N
F093788	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103828_100191	Not Available	1096
Ga0103828_100498	Not Available	809
Ga0103828_101172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2	612

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103828_100191	Ga0103828_1001911	F005495	MLKWNGGSNTPNLNMKKYTILKDTVAGGQRVHAGDIVELPEHEGHALCGYGKAEVHVDKPKAEKQDRSVGLKTSKT
Ga0103828_100498	Ga0103828_1004981	F047990	MTTIVGSGDYTVEIDTGAPVQAFRLDDATRGVLDGTTFVLDGLTDFADVTSGTVAMRLNRGRKDTTDSFQPGLFEFTLNDTAAGGVFNPFASDSPYYDPDNDQPGIA
Ga0103828_101172	Ga0103828_1011721	F093788	NLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA*