3300009316: Microbial communities of water from the North Atlantic ocean - ACM15

Overview

Basic Information

• IMG/M Taxon OID: 3300009316
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126429 | Ga0103840
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM15
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7736351
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000073	Metagenome / Metatranscriptome	2639	Y
F002435	Metatranscriptome	559	Y
F002457	Metagenome / Metatranscriptome	557	Y
F002556	Metagenome / Metatranscriptome	548	Y
F009464	Metatranscriptome	317	Y
F010745	Metatranscriptome	299	Y
F021044	Metatranscriptome	220	Y
F033052	Metagenome / Metatranscriptome	178	Y
F078190	Metatranscriptome	116	N
F079563	Metatranscriptome	115	N
F093202	Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103840_100088	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	998
Ga0103840_100098	Not Available	970
Ga0103840_100106	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	946
Ga0103840_100246	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	734
Ga0103840_100278	Not Available	700
Ga0103840_100426	All Organisms → cellular organisms → Eukaryota → Sar	627
Ga0103840_100428	Not Available	626
Ga0103840_100435	Not Available	625
Ga0103840_100875	Not Available	516
Ga0103840_100886	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103840_100088	Ga0103840_1000881	F010745	TLYCFSVYTSNTGTTKPNYELDIIQEQYRRKISIFACEQSDVFADVTAQVGDGLMTIPVDDVEGDFHFAKRKVSGSWVNTGLFSQVWKKITKHVYTDWTVKVDADAVFIPNRLRSWLGGQLVPYNGIYLENCKFVDYGYFGNLEVFSKAAFTTLLANIDLCKASTEINWKVGVKNGKYGPMGEDLFAQTCLDMKGVRRVEAFDITTDGACPADRPHDQQKNKKWKPNCAETSTAAMHPFKKTEEWFQCWQATIDAFGDR*
Ga0103840_100098	Ga0103840_1000981	F093202	MSAVLGEPLTLGEEQIHRRSGKAFLVLPLLIGFALGVFFSPVLNHSEVKEPAITAMASPASISCLRVPAMSVNAMQGVLRKNGVPSSPMEKFALTSFAATRDPSMKAQAREEFAKLPVETQTKLKQLSKDLVVRAAAFSPEDMAGVSAPLGFWDPA
Ga0103840_100106	Ga0103840_1001061	F002435	MFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVGALSDYKVPQEGVYIENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRTCWQQAVDA*
Ga0103840_100246	Ga0103840_1002461	F033052	NFLKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103840_100278	Ga0103840_1002781	F021044	APDLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLVKYASLVQIAVSFKARCTFSFRDEGATRTLRIIDDTGYVHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKPGTCGEKIPTPSTSTTQESIAEVGDQARVVVEKKYRAEADAMMKEGVEQVRASVKAKYGIKD*
Ga0103840_100322	Ga0103840_1003221	F002457	EYGGSIEKRTAARKAMFDAVDSKQGAARGWIGAAQFTDWATTHIAGKIAEIDTASEVDFYHVANYSEADFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPDGTVEARKAIFESMDDTKTGLITFRKFLEWTVTHTAGKVEAHKAGKGYKK*
Ga0103840_100426	Ga0103840_1004262	F009464	YFGNLEVFSKQAFITLVDNLETCYTAIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPDMYRKCWQQAVEA*
Ga0103840_100428	Ga0103840_1004282	F078190	GRKAMFDAIDGADGFKPRGKIAMGQFLGWSTTHIFSKVASIKGETGRVAFRHVEDFTKEEYVAYVEEAVNKPDSIASTTLYNYLLTLFVEADIECKGKISYEQFDGLVEIAAASPRHFGLAPAGRDAAARRAMFDAMDYNKSGYVTFRKFLRFVREHAREKVTEYKAQN*
Ga0103840_100435	Ga0103840_1004351	F021044	YDTAAAGAKACKGPDAADLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLIKYASLVQVAVSFKAKCTFSFRDEGATRTLKIVDDTGYTHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKPGFCGEKLPTPSSSTSIEEVRANTSIRVREADQAAANRELQRLVEEAKRAVGAKYGA*
Ga0103840_100686	Ga0103840_1006861	F000073	PKSFSAFCEENKAIRDMIETGKGNLQWERDIPPAALANLESLASTDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPEANRKEVEGLIEKGNMTLDLYEILGTCTWVKPQ*
Ga0103840_100875	Ga0103840_1008751	F002556	VNWATDHLITKVATIDIHADVDYYHIEQYGEHQYLTHLEEAVTNPTSRAHASLYEFLLAIFTECDSRSTGVLTFGEFDTLLSRAAEVPRTFGLAPPEASKETRKKFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIAAQKAGKGYKK*
Ga0103840_100886	Ga0103840_1008861	F079563	MISIQLVEMMKIYSNLRQMGGEELGHSKGTDFVVAEDLGHLLVGDEELLVFGILEVVLFQVSPKLFDAFGTASFLLANDGSKVLAELHGFGKSSSFRHFDFFVGS