3300009310: Eukaryotic communities of water from the North Atlantic ocean - ACM9

Overview

Basic Information

• IMG/M Taxon OID: 3300009310
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117985 | Gp0126464 | Ga0103875
• Sample Name: Eukaryotic communities of water from the North Atlantic ocean - ACM9
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6874772
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000276	Metatranscriptome	1390	Y
F007073	Metagenome / Metatranscriptome	358	Y
F008117	Metagenome / Metatranscriptome	338	Y
F014836	Metagenome / Metatranscriptome	259	Y
F039594	Metagenome / Metatranscriptome	163	Y
F040511	Metatranscriptome	161	Y
F056539	Metagenome / Metatranscriptome	137	Y
F088204	Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103875_100084	Not Available	851
Ga0103875_100145	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	752
Ga0103875_100344	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	599
Ga0103875_100496	Not Available	547
Ga0103875_100604	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	518
Ga0103875_100616	Not Available	516
Ga0103875_100667	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103875_100084	Ga0103875_1000841	F007073	ANWHGTWTANNRYGGEMYACPVGNRLYGVYSNAGFFIGRITDRVVEGTWYEGGRGDRNDWQGSFRITISEDNQEFDGFYYRVTQDGYEIRWHETRLGAPFPSNPTHYQCLVPGDEPVLGGFFNNPGQGRDPAVYSLCKDEYDQIYGSFGAPDGFIEGWSVDSSTGFHGYKYDSNGRSGAYILRSVSDTLVKGFYWRGRLARENIQTSVPETLHRTSYTTTLNECERVGPGFLRRLRGPTNAAGALTMSMFVVFAAAAFALFI*
Ga0103875_100145	Ga0103875_1001451	F039594	FDRPWMCDIEIPTKAAHPGDNAYFVSVNGKNATYSIAFWRGRENCHSFTGSGRNEGLDFCAGLVPYGTWRWDSYRNLDNEAECFFEELYQHFRVQPCYTGVTPECNATLQSFACHESFRRCDEFGFYTGTCRDSCEAVVYECANWFESVDLEHYNCTSNRYIDSHSATCTGNPTFSTIDPQTQNFFGNEPDLLLFKSSPSSSDSSSLNISLLLCVISTLFALLF*
Ga0103875_100344	Ga0103875_1003441	F000276	RNKCVAGDNAYKCAVFFENLTPKRELTWVGALPDALKKATNQAEVRDILGADVTEESFSDLPTCDDKTANARCFAILDRQKSISLDSCDRNLINTRGSETVGDYLCGQVRRWLRRSDDFKANGIEGLRLPFYYSACNGEWTPISDGSEALYFDEDLCCNPQGKFYRCDGSQFNDSC*
Ga0103875_100377	Ga0103875_1003771	F056539	LISCQLSLINPPGRGFSFGDSRHAPCGQSPTHTAERIAWEEGSVREIEVQILGAAGGGVVFDRYSCVLNGDAENPIEPVFPIQGALAVEIPDWDDQIYRLYVRLPSFRCTGDVTMQLVYNAENGQEFYQCQDIILTYSGASTLSMSIFAIVVAVAMMIL*
Ga0103875_100496	Ga0103875_1004961	F040511	ESKCCISEPSSSSKLKFPPSGGAETLAPSQGTFWKEFTYKGEVDFNGVHYKGKAKYYLLSGVNEPVTDFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTICHDYEPSSLDSSAFDTSVFDIPEVCKTTTLTCAFP*
Ga0103875_100604	Ga0103875_1006041	F008117	ALLDPGGAGMKVDSVSVRGMSGYMQRSMRLLEKPGSPTVTDNIRVMEAAREILYRPVKNGQESDEERVFALRTGPLRFEMFSRNSRDQMRTDWTAPRSVAISVFDATAAVARRM*
Ga0103875_100616	Ga0103875_1006162	F088204	WRWDTEACKKQWKWGPWGEDLFMQKTMDDAEVLKKEDFTLTDTGTCPGMRPKSDKKNASYVPSCTDSGVYKFVAVHPMRTLPAWKDCYSAISR*
Ga0103875_100667	Ga0103875_1006671	F014836	TITVDQERRVNELYVGPNRWDTTRLVIDEDLTIVYDDFPVISRAQGYRLPTGHVRLIIQGKGFGFVSEDLQVVARDFWENDDDANIEDMDPFVYDCEMATLTYRDAKIECNIAAANMMPYTLEVQVSANGFTTPWVQLSEHIR*