3300009294: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 686765762 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300009294
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052878 | Ga0105908
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 686765762 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2930069
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F067847	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105908_10006	All Organisms → Viruses → Predicted Viral	2512
Ga0105908_10145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	926
Ga0105908_10148	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	920

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105908_10006	Ga0105908_100065	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEDRKTYNAKEYFDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDDQKAKFTRHTMTNEKGHQTYDWVLENVEWAADMIRYF*
Ga0105908_10006	Ga0105908_100066	F027205	ALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0105908_10145	Ga0105908_101452	F067847	MFSHIVRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDN
Ga0105908_10148	Ga0105908_101481	F018385	MMTERATRWNPYKELSIEKDRDPVTDDEFIYGNNVKHFTLTVYSHDGRVSKYWNARVLPDQVGNCRIACPRDGKILCFNWFNWTAYMFTHDGMNELVFMPDSKRRIVSQLSFDNSGGKEVK*