3300009134: Marine sediment microbial communities from methane seeps on Chincoteague Slope, US Atlantic Margin - Chincoteague Slope PC-6 397 cmbsf

Overview

Basic Information

• IMG/M Taxon OID: 3300009134
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118797 | Gp0139522 | Ga0118738
• Sample Name: Marine sediment microbial communities from methane seeps on Chincoteague Slope, US Atlantic Margin - Chincoteague Slope PC-6 397 cmbsf
• Sequencing Status: Permanent Draft
• Sequencing Center: Oregon State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34781195
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Chincoteague Slope, US Atlantic Margin
• Coordinates
  • Lat. (^o): 37.53516667
  • Long. (^o): -74.29791667
  • Alt. (m): N/A
  • Depth (m): 362

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011939	Metagenome / Metatranscriptome	285	Y
F020845	Metagenome	221	Y
F048391	Metagenome / Metatranscriptome	148	Y
F065254	Metagenome	128	Y
F069660	Metagenome / Metatranscriptome	123	Y
F092080	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118738_100009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	104513
Ga0118738_100162	All Organisms → cellular organisms → Bacteria → Proteobacteria	22699
Ga0118738_102917	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1254
Ga0118738_106661	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	773
Ga0118738_106980	Not Available	753
Ga0118738_107394	Not Available	731
Ga0118738_108757	Not Available	667

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118738_100009	Ga0118738_1000095	F011939	MRLVEETLQEEVHKLDKRVQLIAVNQTKKKDAYRVTLLRDGRSGNAAIKKDLIREYLAGEGKGNELRKALGKAVSHLSIRYRK*
Ga0118738_100162	Ga0118738_10016211	F048391	MNDNRFVRPINNLDYLEELLNEGYVIKGPRKDPSRDLTSFKAFLKKGKEFAPEDWLSSMGYEFVEPSTFTKGHRIAYKIIDEFPDQRFNSNYSLVKGKKEIPLFLKTEVPK*
Ga0118738_102917	Ga0118738_1029172	F065254	VALNKGSEQAEKASVATETLLWGCPITNFKATLPFNRMKQFFAAFKKRPHDPALARFKGYN*
Ga0118738_106661	Ga0118738_1066611	F065254	LNAPVALNKCSEQAGKASVETETILWGCPVTNIKATLPFNGMRQDFAAFKKRPHGPALARSKGDN*
Ga0118738_106980	Ga0118738_1069801	F092080	MQDKRVTIRIPFGIWKALRELQTVGKISSIQQAAVTGMNNLIESLKWGVEDNQRDAAKKRVLNVLVKEKPLGNWEDIHRERTEADADRS*
Ga0118738_107394	Ga0118738_1073941	F020845	MNKTKQTEQKEIGRVKLGDTQDLVVSIVDDEKVDLRIFLNTDSYKGPTKRGVRFYMFDDNWPEFMKLMEKVDRKYQELT*
Ga0118738_108757	Ga0118738_1087571	F069660	MTNILRLLGIIGGIVPIILALIKEFETPGFGAEKKKVILDAIALFYDKLAEGNVLPITKEKLLGLAGNFIDIAVAFFNLVGWFKHVNPTVSI*