3300009107: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate b

Overview

Basic Information

• IMG/M Taxon OID: 3300009107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137074 | Ga0117918
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate b
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 204216385
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Rhodohalobacter → unclassified Rhodohalobacter → Rhodohalobacter sp. WB101	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium HF0130_05G09	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 295

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012354	Metagenome	281	Y
F013575	Metagenome	270	Y
F015170	Metagenome	257	Y
F018941	Metagenome / Metatranscriptome	232	N
F020371	Metagenome / Metatranscriptome	224	Y
F025146	Metagenome	203	N
F026538	Metagenome	197	Y
F033867	Metagenome	176	Y
F034189	Metagenome / Metatranscriptome	175	Y
F039352	Metagenome	164	N
F040059	Metagenome	162	N
F045146	Metagenome / Metatranscriptome	153	Y
F072236	Metagenome	121	Y
F082790	Metagenome	113	N
F088382	Metagenome	109	N
F089529	Metagenome / Metatranscriptome	109	N
F092692	Metagenome	107	Y
F096688	Metagenome / Metatranscriptome	104	N
F098015	Metagenome	104	N
F099975	Metagenome / Metatranscriptome	103	Y
F100949	Metagenome	102	N
F103389	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117918_100188	Not Available	48418
Ga0117918_111169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Rhodohalobacter → unclassified Rhodohalobacter → Rhodohalobacter sp. WB101	3066
Ga0117918_119355	Not Available	2074
Ga0117918_119455	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium	2067
Ga0117918_121373	All Organisms → cellular organisms → Bacteria	1933
Ga0117918_122620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1857
Ga0117918_127108	Not Available	1635
Ga0117918_127797	All Organisms → Viruses → Predicted Viral	1606
Ga0117918_129830	All Organisms → Viruses → Predicted Viral	1525
Ga0117918_137860	All Organisms → Viruses → Predicted Viral	1289
Ga0117918_140301	All Organisms → Viruses → Predicted Viral	1235
Ga0117918_140539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium HF0130_05G09	1230
Ga0117918_142482	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1190
Ga0117918_157173	Not Available	972
Ga0117918_163992	Not Available	896
Ga0117918_165625	Not Available	878
Ga0117918_168251	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	852
Ga0117918_169391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841
Ga0117918_171949	Not Available	818
Ga0117918_173784	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	801
Ga0117918_174056	Not Available	799
Ga0117918_176452	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	776

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117918_100188	Ga0117918_10018844	F100949	MISDVKKLNYVKRIYKRTPDKYINLSDIEGWPRDEDWMNDFPHLNHGKMRRRGTVCPCVYEKYNEVTNRAIVNYISELLESDISIPLSIIDVGGVISMIDGVHTALAYHKLGISEVPVYINSKSLPFGVCYKDYVIDKNGNKIKINLVSGYYESK*
Ga0117918_111169	Ga0117918_1111692	F088382	VPVTDEALNAVERANELLDEVERLREEWERSRELIESAKQMRIAADGYISTLEEANKALAECVNGALEEMERLQKVNKEIARAAEVMAQISKTLQ*
Ga0117918_119355	Ga0117918_1193551	F089529	ESWTKSLMSKSKKPLHLESIEHNPTNGFDTGSVKSAMTKDGEHIYVSNGEEIPYEDGFRVCVGQEKAPQDLRSTFSHISQERWDAIFGKDK*
Ga0117918_119455	Ga0117918_1194555	F039352	LQDEVIQNADNILPSIDIDELLKDTEGYLLSLGLSFLNEHMDEIEKGAKQGEKFAKEVLKKSG*
Ga0117918_121373	Ga0117918_1213733	F088382	MDEALQAVERTNELLDEVERLREEWERSREMIESAKQMRIAADGYISTLEEANKALAECVNGALEEMERLQKVNKEI
Ga0117918_122620	Ga0117918_1226201	F096688	MRLKDKEGKLMRIIKSLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGIEV
Ga0117918_127108	Ga0117918_1271081	F092692	ENQMNFYEIKLNVVIDRNPPQALKHLRSALEEIFEKNRHFNTSKVNLVSIEEKKKR*
Ga0117918_127797	Ga0117918_1277971	F040059	ATGSEVKKGASWDVSTAGTYIVSYYCDGTNVYVSASEALA*
Ga0117918_129830	Ga0117918_1298301	F018941	ALELMTDGMEHDLFKKDDMEQLLEGCAKQSEYQAHEFMWRSFKRMLRQDTGGNVVGFSPELRGPDVH*
Ga0117918_129830	Ga0117918_1298302	F045146	MSIEWGRGSGFNLGKYKDMRVERSRNGGGWSFLVSDDKLTYLHVDNRHFKTKEELDECIMEWINERKKM*
Ga0117918_135897	Ga0117918_1358972	F099975	EIKLLRGDVACYVAQARAPIDAEIGQKDHSWMETI*
Ga0117918_137860	Ga0117918_1378602	F033867	MVNTGRIGLGNMEYMEQYGIHIQTATRVIADYIASEDKMIAEGKMPTVNHLYAFLDRMADTFHDAHKDVMKRIGIKDLIKEDFLYLEDKE*
Ga0117918_140301	Ga0117918_1403012	F026538	MIMYKLTENSIQRLSDNASIPQAEGNRDYQQFLQDVKKEGISIVEGAD
Ga0117918_140539	Ga0117918_1405395	F092692	ENQMNFYEIKLNVVIDRNPPQALKHLRSALEEIFEKNRHLNKSKVNLVSIEDKKKR*
Ga0117918_142482	Ga0117918_1424821	F103389	MKYAFLTPIYNTISGRLLPQFLNLQEWCEGLDGKIYTVVGKTHVNARNWLATDGGGFRNPTKLIDKVDYL
Ga0117918_152221	Ga0117918_1522211	F025146	ILWEAGHIWLGPSDAVAVKLACEQADEVTSLRRAAAQIKNAGLKLQYHYATQAAEKLLMSSLSQLGFTPTARARLGLTVAQAAETESRLSRFQRRAG*
Ga0117918_157173	Ga0117918_1571734	F072236	MWRELNDEYYRIQTNCPMVVKKLQRREDAKEVGATTGGSTQYWLIFRVKYKKPATAKQSFKRLTGCKNNFTVRNGCFQAEIVHKSYDSN
Ga0117918_163992	Ga0117918_1639921	F098015	GEKEVRDRSDTQPDREARSLQMKMDNAQKAGFNETEKRAYLGRLVSLGRAKDLVQKGSQGKGFKLR*
Ga0117918_165625	Ga0117918_1656251	F020371	AYSHDAFVDSEFKSLAEDYVDNVKAGGRQRSAALRSPTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFGGMTQLDEGQLGQLKELTYARSTFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISTADASLTAKAAIGVWDTFVSSTDRSTNSPLLDLGIAKLLIEGSGVGGKMNRVGMHPLDFAKYMSNTFIRGVASTKPSEVTFESGTQELPGFPEAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKY
Ga0117918_168251	Ga0117918_1682511	F012354	LKIKSSSVNPVASIPKPIPIAKKAIDSLNNVGLPVFLNPIYEIIPITRPTNSPTKFRIISKKNSNYADSVTVLNKVSEQIF*
Ga0117918_169391	Ga0117918_1693913	F034189	GQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGSYVPA*
Ga0117918_171949	Ga0117918_1719493	F015170	MTDDDDWYSFDPKAWLDHEDVLDDQQEEEIRVIDWQDEDPQFEGVPEDFHLHIIDICLICGNPVESCVCEMPRLQKTSNGCDLRATEGERMDYLRNLQESP*
Ga0117918_173784	Ga0117918_1737842	F088382	MLGVTNEALDVVERTNELLDEVERMREEWERSREMIESAKQMRIAADGYISTLEEANKALAECVNGALEEMERLQKVNKEIAKAAEVMAQV
Ga0117918_174056	Ga0117918_1740562	F082790	RLNVLRKKGAKVKPKLQPSAEHIAEVNRIEFAVNRRVFWELGREGFAKWSRLGYKDYGTLARAYGIR*
Ga0117918_176452	Ga0117918_1764521	F013575	LLMPDLTWFYFHCVLALIIIVKDHNGTLEESLDNFEKKIGLYTYVDTTEETDAPYYMPPIEEEVDSTWILPDRLKIKETEDDSSRTA*