3300008983: Combined Assembly of De NOVO T18 (live) Tyne Sediment Benzoate Gp0123698, Gp0123960, Gp0123961

Overview

Basic Information

• IMG/M Taxon OID: 3300008983
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0123698 | Ga0116015
• Sample Name: Combined Assembly of De NOVO T18 (live) Tyne Sediment Benzoate Gp0123698, Gp0123960, Gp0123961
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 265599046
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073228	Metagenome / Metatranscriptome	120	N
F102132	Metagenome	102	Y
F105440	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116015_10014871	Not Available	1353
Ga0116015_10018477	Not Available	1176
Ga0116015_10047007	Not Available	610

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116015_10014871	Ga0116015_100148714	F073228	VEGIDMAITIGDIMDINSSKYGEFLYKIVMVFPHNMEVDKTELARLIKISNNTLTFERKNGENFTIDERDIEHMDLFRSPNYKGGE*
Ga0116015_10018477	Ga0116015_100184772	F102132	METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEKEIDPMEDGDPTYYKKLEANNKDRRGIIR*
Ga0116015_10047007	Ga0116015_100470072	F105440	LKSAVLLSKERFIEAMRSAEAKDRSISYRRLKADRSIALLYNPATRDGRFSTKLAARAGLADGYYEAFPHIEYAQTLAENNANLQKYGWPEYEGI*