3300008916: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA2

Overview

Basic Information

• IMG/M Taxon OID: 3300008916
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117944 | Gp0126070 | Ga0103481
• Sample Name: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA2
• Sequencing Status: Permanent Draft
• Sequencing Center: Sodertorn University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30522264
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → bay → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Barcelona, Spain
• Coordinates
  • Lat. (^o): 41.666
  • Long. (^o): 2.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F005505	Metagenome / Metatranscriptome	398	Y
F007527	Metagenome / Metatranscriptome	349	Y
F010768	Metagenome / Metatranscriptome	299	Y
F014267	Metagenome / Metatranscriptome	264	Y
F020014	Metagenome / Metatranscriptome	226	Y
F047079	Metagenome / Metatranscriptome	150	Y
F090442	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103481_1000634	Not Available	1785
Ga0103481_1000699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1675
Ga0103481_1001430	Not Available	1123
Ga0103481_1001907	Not Available	965
Ga0103481_1001922	Not Available	959
Ga0103481_1002156	Not Available	906
Ga0103481_1002174	Not Available	902
Ga0103481_1002495	Not Available	841
Ga0103481_1004153	Not Available	640
Ga0103481_1005161	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	568
Ga0103481_1005725	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103481_1000634	Ga0103481_10006344	F047079	MFFNSPLEQFSINKIIPIFIGSLDFSITNSTVLVFISCTVAFLFYNFAIANAKLVPSA*
Ga0103481_1000699	Ga0103481_10006996	F014267	NNIHRIDGVNFEKPSEILAKLFDAIPNIIPLAKNKYPKKGFKINLSRQSY*
Ga0103481_1001430	Ga0103481_10014304	F090442	MKKALATVVIIEPKVATLFHAEYESGKSGTRRGIPAKPRKCIGKKHTLTPMKVDQK*
Ga0103481_1001907	Ga0103481_10019072	F007527	VLSNGTSIGLKTSIDLGGQIDPISIVGAKAAAKNAQKKAKKNITSETMNRIIP*
Ga0103481_1001922	Ga0103481_10019222	F007527	VFNKGTSIGLKTSIPLGGQIEPISITGANAAAKKAQKNAKKNITSETINKIIP*
Ga0103481_1002156	Ga0103481_10021562	F020014	FFSPFGRLYKAYSDEPKPEYAPKKKSVSKPKAARPPIVATIQRGILPISLISIIIKD*
Ga0103481_1002174	Ga0103481_10021742	F007527	VFNNGTSIGSKTLIPLGGQIDPISITGANAAAKKAQKKAKKNITSETINNIIPYRKPN*
Ga0103481_1002495	Ga0103481_10024951	F007527	VIVQPEQSKMSVFNKGTAVALRTSIPLGGQILPISIVGARLAAKKAQKKSKKEHYFRDNK
Ga0103481_1002922	Ga0103481_10029221	F000237	FTPWYYLYLVKLHALFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NIGELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLASLPIIYNLYNSNNNYLSIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMAWFLHHLDLIEHYGFQYVNHMLLKHSNIKKAIKARSLKLGYRVPIKHIKK*K
Ga0103481_1004153	Ga0103481_10041532	F007527	MVAPEQSRIKVFNNGIALGSKASIPFGGQMLPISIVGAKLAAKKAQKNAKKNITS
Ga0103481_1005161	Ga0103481_10051611	F010768	MKEVLNGGYNVHPVPAPNSETKERTTKTTERKRSKMEKLFTLGY
Ga0103481_1005725	Ga0103481_10057251	F005505	FFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFLLLSGMPIFYN*YNVFNKYVATIPMQNSLLQTSFFIFFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQFVYLYLG*FIHHLDLFDHYIFQFSQTFIRRCSSYSLRVLSFHNKKRANQNKTDLN*
Ga0103481_1005960	Ga0103481_10059601	F000075	NFIEKKAMKFTLALIATVAANKYDHMNEDELLAQLASTPSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*