3300008880: Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3059

Overview

Basic Information

• IMG/M Taxon OID: 3300008880
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117986 | Gp0126487 | Ga0103898
• Sample Name: Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3059
• Sequencing Status: Permanent Draft
• Sequencing Center: Massachusetts Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6845012
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F001926	Metagenome / Metatranscriptome	616	Y
F101219	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103898_100295	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	785
Ga0103898_101109	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103898_100295	Ga0103898_1002952	F001926	VRHEDIPDMSNPKTTKAVLEGDKLMKEVLNGGYNVHPVPPPNSETKERSARKYERKRTKIEKLFTLGYTTSGDP*
Ga0103898_101109	Ga0103898_1011091	F101219	ISLPLVFATFFFVWKKQALEVTPESFQEERTQPVDDQVVEPVAPSMAKVENTESEVAQLGSHEKPVEKIDNDIRIAPSQAPPVGNSKPRVLEILEDVKIAIKESVIKNAEGNQALDTRISLVETSMKHPLMILEEKGTKFGQTGEEVIKANAHVATHFMLQVVPGTNLLALEEKLS
Ga0103898_101268	Ga0103898_1012681	F000075	AALIATVAANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*