3300008870: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_rapeseed oil diet

Overview

Basic Information

• IMG/M Taxon OID: 3300008870
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117913 | Gp0125708 | Ga0103382
• Sample Name: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_rapeseed oil diet
• Sequencing Status: Permanent Draft
• Sequencing Center: Aarhus University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19947985
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006970	Metagenome / Metatranscriptome	361	Y
F011364	Metagenome / Metatranscriptome	291	Y
F028974	Metagenome / Metatranscriptome	190	Y
F078281	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103382_1001351	Not Available	572
Ga0103382_1001649	Not Available	534
Ga0103382_1001657	Not Available	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103382_1001158	Ga0103382_10011581	F078281	TVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRME
Ga0103382_1001351	Ga0103382_10013512	F011364	MVIDSEVNERDEGIFYLLPSEMSKSGLLNPEKFDSCDIRNVEVDDIRPSALLGILSSLKPNGRVTVTLCEPIAVMQPYEARMVEANAKLAGFVDIQTSPGTFFNKFSNQEDETLVVTFTKPERPR
Ga0103382_1001649	Ga0103382_10016491	F006970	KQESENPLLDKKVVRKVLQTHAYSTPWDQPIYQETVVSNAKYSKIESVFEIPYYRNPPAYKSGDFWERFNMCVERKKNLKQTLDDITKRYDDIMVVFNKELDKTFAGNPTQEQKDRMKEYIIQMMTVYHESREVEHYDDIFKKEVADKNMTFNEEEKEKYDDGMAILSKAFPFQLTV
Ga0103382_1001657	Ga0103382_10016571	F028974	TGTNKGDISILELGKPGKEKLIKEISYFGGNLEIRIIRYNAIDREIYTGDQKGKITVWSLKSGQSIYAWQAHQEAITQMKYFPNKRQLLSMAKDKKIIYWQLPENWVNDSIKKFQEENIREINNTRATERLQKAAQKKEGDDDSSSDDSLDGWDIRP*