3300008851: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_control diet

Overview

Basic Information

• IMG/M Taxon OID: 3300008851
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117913 | Gp0125705 | Ga0103379
• Sample Name: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_control diet
• Sequencing Status: Permanent Draft
• Sequencing Center: Aarhus University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25938558
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N
F008062	Metagenome / Metatranscriptome	340	Y
F078281	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103379_1000807	Not Available	672
Ga0103379_1002118	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103379_1000807	Ga0103379_10008071	F006460	MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGLPSKFNPGGSALPSAVAASLGNSGVAGSQIGLTNSGVVLNNSGVVV*
Ga0103379_1001021	Ga0103379_10010211	F078281	LIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEY
Ga0103379_1002118	Ga0103379_10021181	F008062	GGFRLGEGEVPVDEIYAAVVALFKGMAETDEATCAGVLENQKDKILEIVYAAIDEVKAGADVSTAAQNALIKLMGVDGLVSECNVLAMPAIITKVTSKDGLVDIFQALIDNIDDVYSYGEDIKAAFDEKDYNAAAEAFGHILAIALDFQVNL*