3300008850: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_rapeseed oil diet

Overview

Basic Information

• IMG/M Taxon OID: 3300008850
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117913 | Gp0125706 | Ga0103380
• Sample Name: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_rapeseed oil diet
• Sequencing Status: Permanent Draft
• Sequencing Center: Aarhus University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20720340
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Chaetomiaceae → Thermothelomyces → Thermothelomyces thermophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N
F008855	Metagenome / Metatranscriptome	327	Y
F014928	Metagenome / Metatranscriptome	259	Y
F030337	Metagenome / Metatranscriptome	185	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103380_1001001	Not Available	629
Ga0103380_1001605	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Chaetomiaceae → Thermothelomyces → Thermothelomyces thermophilus	542
Ga0103380_1001812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103380_1000681	Ga0103380_10006811	F006460	EPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGLPSKFSSVGVVPTPLVGSVPLNSSIGGSNVLVNSGVGGVALTNSGLGVPLANSGIAVNPSIGA
Ga0103380_1001001	Ga0103380_10010011	F008855	TEEKKDMKSIFNIKMSNKSNFNLSFLVDVGKTNWYNGEEKQNEDFLNKDLKEQIPKSQIFEINSLIFNITKHKREILTKYKCFFDEQSNSLSLILTEDICFSDFTKEIMMNLFEFAQKVGIETIYFLVAKKNAQYIRIVQDLMIVGFEVDEKVKTVTIEDKVYKVLMLPVKEQDEEIEEVF*
Ga0103380_1001605	Ga0103380_10016051	F014928	PVIHKEIQQIVHENVQPVITKEIQPIVNTKIQPVIHREVQQIIHKDVQPIITTQIQPIINKKIQPVIHKEIQPIIHKDIQEVITTNVQPIINQKIQPVIHKEIQPVIHKDIQPIVTTQIQPIINKKIQPVIHKEIQPIIHEDVQPVITTNVQKIINRQIQPVFQNRIKNVVTKEVDKIDT
Ga0103380_1001812	Ga0103380_10018121	F030337	MVMMHKTIAYQRFIRELVRKWRFSSFIQSISRRKLELMYKNLHVSYLQMANELFGEKGTKNASVVKEFERISTRMGLFTNEDYNSVNEENFCEKITKKYVFQPMPLLLEKEGPTQFFASGIEIEDSGENNEDYYVDQELGGETIGKYKQETNKSNSKADKNSSR