3300008810: Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet

Overview

Basic Information

• IMG/M Taxon OID: 3300008810
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117913 | Gp0125703 | Ga0103377
• Sample Name: Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet
• Sequencing Status: Permanent Draft
• Sequencing Center: Aarhus University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18900503
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N
F008062	Metagenome / Metatranscriptome	340	Y
F008866	Metagenome / Metatranscriptome	326	Y
F040462	Metagenome / Metatranscriptome	161	Y
F096592	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103377_100672	Not Available	664
Ga0103377_100823	Not Available	627
Ga0103377_100911	Not Available	610
Ga0103377_101572	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103377_100467	Ga0103377_1004671	F006460	MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGLPSKFSSVGVVPTPLVGSVPLNSSIGGSNVLVNSGVGGVALTNSGLGVPLANSGIAVNPSIGSNVLANSGVG
Ga0103377_100672	Ga0103377_1006721	F040462	KMASKTIKLFLSFILFSSIFSLKLQLVDEDYVIVQIGYPSKEYKLIVDPVGPFTYLFKENNSTSKRDGDLASSHDFQNVFGNFSGVWKNDFFYLTEDRLMNFRMDYLEIQKKETKLKCDGVLGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTL
Ga0103377_100823	Ga0103377_1008231	F096592	VKYIISLGYTNKPLTTFVFAYMITCNPLFGNLLGAKLSPKYGGYKDKNSLYFVLAHQILACIAFTPAPYFEEWWKFCIFASFFQVLGMANVGPIGNVITGSLNSEQKKRSAGVLAIFNVIIGSVPAPPIYGLILDRWGEYDKHCAMKAYKNYLYLSVPLICIAIAIRHLRFKNKGEPLIDKEKKDEVEYKEPMQEFVDDFKLKTKDEQP
Ga0103377_100911	Ga0103377_1009111	F008866	MFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSP
Ga0103377_101572	Ga0103377_1015721	F008062	VSSFRIREIPVDQIYDAVVALFKGMAETSECKCAAVLTNNKAQILEIVYAAIDEVKAGTPIETAVQNAALKLMGIDGLVSECNVLAMPAIITKITTKDGLVEIFQTLIDNIDEVYSYGEKIKEGIQNKDYNAAAEAFGHIFAIAFDFHVNL*