3300008804: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-3

Overview

Basic Information

• IMG/M Taxon OID: 3300008804
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126360 | Ga0103771
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66712235
• Sequencing Scaffolds: 12
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella	1
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000020	Metagenome / Metatranscriptome	6197	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000244	Metatranscriptome	1468	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F000326	Metagenome / Metatranscriptome	1295	Y
F000577	Metagenome / Metatranscriptome	1015	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003249	Metatranscriptome	497	Y
F003455	Metatranscriptome	485	Y
F005209	Metatranscriptome	408	Y
F009511	Metatranscriptome	316	Y
F013498	Metatranscriptome	270	Y
F020844	Metatranscriptome	221	Y
F022887	Metagenome / Metatranscriptome	212	Y
F037231	Metatranscriptome	168	Y
F067773	Metatranscriptome	125	Y
F073590	Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103771_1002358	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1333
Ga0103771_1002561	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1288
Ga0103771_1006725	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella	795
Ga0103771_1008469	All Organisms → cellular organisms → Eukaryota → Sar	703
Ga0103771_1008992	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	681
Ga0103771_1009020	All Organisms → cellular organisms → Eukaryota → Sar	680
Ga0103771_1009057	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	679
Ga0103771_1010254	All Organisms → cellular organisms → Eukaryota → Sar	634
Ga0103771_1010282	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	633
Ga0103771_1011464	All Organisms → cellular organisms → Eukaryota → Sar	598
Ga0103771_1014465	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	528
Ga0103771_1014526	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103771_1002358	Ga0103771_10023581	F020844	QLDGKLPEDVAALVRLTGSDQKTERADFDEASLQKARRILNGMILAAWGELDDVVFECKEFQERNRGTYEQVVNDLARLGSQLAKLAENRVSASQGITKADSERKEAEEKLSTITQDFTAKRFENSREMSVRKNDLAVFDFILMATQCKDSALVQLDSESKSSPKVSICNTQDGLTLNFADHQLQAKVERLMTPEARLALREALGQAVEPFGLVQIRQAPVTIDPNETTTVLPTYAATVVPVKEKPHPAGQWKKCLDGTPNCGLLHDLMSLEWGKFRDGFDELTAEMNKNQQEYDTVKRNINDELTVINDEKTKQMEILANTISSINADTEELNEKDEQKRALTTEFDITCKIFREKIAEILFTKICAVRKVRNELLVNSALTPPSNLSDCDFSDWVSKTGECFAPNGNAILCDDTCPQTDPYKCGGSEVMKRDIVVAPDANG
Ga0103771_1002561	Ga0103771_10025612	F000577	CKTVYESMCETRYHEHDVEDDVVDCETIQDEKCEDVTQGYTTEKKCTKWPRQVCKTEKKQVKKYSPETECKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEENCNLEPQRSCKHVTKLVPLLKPQEECVDIPKEVCSRSRTNPRKVQKPVVKKWCYVPTKESGLA*
Ga0103771_1004815	Ga0103771_10048151	F000241	QVVRMTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103771_1006537	Ga0103771_10065371	F000241	CDQLATSGAEPKTANMTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDASAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVVKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYQGKELKQDGQDGFAR*
Ga0103771_1006725	Ga0103771_10067251	F067773	MGTDEWKALANPDFKGTVGGNYDGALDTGHKEGMQTFGETYEGQQDENQYGVLALLEVIQSDFANLEADTAAAEVEAEKGYETFITESEKNKAVKERNIEMNTADKATAEAKLQEDIADLKSTQDELLAAERYYKKLVPQCIDQGMTWDERVKAREAEIASLKMALKILSSEDLATSAL*
Ga0103771_1007012	Ga0103771_10070121	F000020	SLAAQTAVAQALTVLKEFYAKAGEATALLQQEPPAIFDSPYKGMQSENGGVIGMLEVIESDFARLEADTKAAEATAQKQYDTFMTDSKVDKAAKTTDIEHKTAKKQDESQGLIVKKEDLEGTQKELDAALAYFDKLKPSCVDAGVSYETRVEHRQQEIQSLQEALRILNGEDIAL*
Ga0103771_1007908	Ga0103771_10079081	F037231	RDYQNRNAVTLRAKHVTMVGGMNIALQDDIDAQQKTFVGGQHLRYTGTLKFFTPKHGFGYVIMDQGYDVDPSVPSELRVETDEVNAGGKQPCFMENLAVEFGIWRTKKGGYMVYNMTLPGGHPLTQDALENRISMGLQSYTGKVAIWNWRAGWGFIKCSDATMLPPRVLAKLALQVQAARQRGKNVGDDKMLYFRKADCAHTAGQNLRQGADVSFQVYIDDKGAGACDVHC*
Ga0103771_1008469	Ga0103771_10084691	F013498	MKSCGSSVTVLVVVLQVAAAVRVNKTEVANAACTSEDLATRAMVQNKLAGICVDMCKEVGAFPKCQCPDYTDTTDKTPGTMTWDELLKFMGDLTMWGRDSLKTWSKLSAFQQKAVVVRAVQVSKACLAEDMKHRAALQSKLVGICVEMCKEVGAYPEKCTCPDYKDTTDKTPGVMTWPELLVYMDNVEGQGSEAIKAWKGEAAR*
Ga0103771_1008992	Ga0103771_10089921	F003455	KIRQESHADYVEAKSDLELGLTGVRKALGVLRDYYATGAASMVQAASQQPAMPEKFEKATGAGTSIIGILEVVESDFATSLSKEETQEADAQSEYDTITQENKVTKTIKDTDLKYKNEELKSLAKAIAELSGDKETTGAELSAVNEYYAKLRERCIAKPETYEERKIRRESEIKGLKEALTILENETAFVQRKTRHGHIRGSLTAH*
Ga0103771_1009020	Ga0103771_10090201	F003249	LANYSTQRSLTTSVDTMTYGATSLLALSALVAAASGSLLRADRAAWEPESCEELAPGVPCRKLYEHPQGSTFVGPCPTESMANPEGCAAQFEGKPDAEQCPQIYCPKALGVTMKLICGGACCPTCWAPDHVVAMDRHTSLENPVTVPPAPQAPPTCAGARCFEPVCASGFEKGFVQGNCCYSCVPGR*
Ga0103771_1009057	Ga0103771_10090571	F073590	IDKIRQESHAYVQAKADLELGLSGVRKALGVLRDYYAADAASMLQRDSRQPALPEKFKKSSGAGSTIIGILEVVESDFATGLTKEEAQEADAQSEYNTITQDNKVTKTIKDQDLKYKSQEIKSLANTIAELSGDKDTTGTELAAVEEYYAKLKERCIAKPETYEERKTRREAEIKGLKEALAILENETAFVQRKARHLRMRGSLIAQ*
Ga0103771_1010254	Ga0103771_10102541	F013498	MVQNKLAGICVDMCKEVGAFPKCQCPDYTDTTDKTPGTLTWDELLKFMGDLTVWGRDSLKAWSKLSAFQRNAVVIRAVQVSKACLAEDTKHRVALQSKLAGICEEMCKEVGAYPEKCTCPGYKDTTDKTPGVMTWPELLTYMDNVEGQGSEAIKAWKGQAAR*
Ga0103771_1010282	Ga0103771_10102821	F003025	GGKCNKEFWTKWVPRRLKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWKKVHDAAVDVLHNGLWLPNGDEETEMQKQQRKRSILMKSSMNK*
Ga0103771_1010893	Ga0103771_10108931	F000306	PVELAIKKIVDKEFCYDVVRTVCTESIEEIPNEVCSFAYQQKEEDTTAKTVEVTFVKEVKVQMVTVCQPGYGGYGGYGGYGASQQYCKEVAQETAFNVPVVPPVDVPVKVAYPEAIRTCVNKPIALPRVACENLTEKKCITVPEIENAVEAVEKCDTQLAAPACQKVELTLPKQVCIELVYGYAEDPAPAYAPAPAYAPAPAYA
Ga0103771_1011224	Ga0103771_10112241	F000326	EIAAGQSQLDTKTQELASTDQRLAQSKEDIEDTRNSLSADEQFLMMLKEKCSMTDKEWEERQKTRQLEMEAVSRALAILSGDDAHDLFTKTFNPALLQKDSAANSARRVQASKLLSAMAAKLHNPRLATLAYQIRLDAFTRVKKAIDDMIAEILKEKEDEIKHKDFCVDEFNTNQLQTETKEREKTDLIAKIEELEMNIKA
Ga0103771_1011464	Ga0103771_10114642	F005209	TVLIFAVMAALLQPQLVTAVGRADAVRKMIAARNLEVAGLPDPTCATGVIAMKVGDTPQVCCAGYCGECSDYPTCMSVRGQNSTNACCKTQVYELRCGNAPANVCLKPCTESVPPCIMEDGKTFTTPDPSARTAGQDCNKAVSDWRQKAVAATKPQQAK*
Ga0103771_1012103	Ga0103771_10121031	F000241	AGYLERLGPKDTDVPFQPTAGTGPGAEVEFKKRPFGILRYTPGEGGKGAMVQEVIGKSRYPGDPQGQGFASGVQGGWVVKTINGADVLNEDFSKIMDMLDDEVADPRFSKSTAVALQEQGGRLAEASALPVKVTFGTIPGYVYKGKELTADGQDGFAR*
Ga0103771_1013694	Ga0103771_10136941	F000244	KCSAILAVALAVCPVVAGRLGVTPVQKVIQLLEGMSAKGKEEKHDEQVQFAAFKQFCDDTAVEKERAIKEATEKIEILKADISKYIADAAQLTKEIAGHDEDIAAWTGDKDAATKVRTIEKTDYDAMHKDYSESVSALERAIAVLKKQAYDRKQASFTQVSALKELSLIPNDAKRAIDVF
Ga0103771_1014465	Ga0103771_10144652	F022887	MEKKLNKWFAMTLDSNNDGLVNWTDFEKAIEAIVPTEDAKKNARLKILRKRVEQNFQKYFWDLCAAGDANGDGNIDLDEWLDVMNEIIKHVKDTNNFPEWYEGLHKSVFRAHEFFDDRNILKTEFADMMATWNVGEAEAEKAFDFITDLGKKKME
Ga0103771_1014526	Ga0103771_10145261	F009511	AKAIYTDIPYQRERLPERKSLFDYCDSHSNHYLSMAELDRGLFEKFSFEEKPVDDVRKCMLDAYDRAKNYGGDQKGPSADFVDHKEFRIFLEMFVMNLKGVQDHKPEPHVEDLKAHKSDKGGKGGKGTTTCCGGCVVS*