Sample 3300008803

Basic Information
IMG/M Taxon OID	3300008803 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117972 \| Gp0126359 \| Ga0103770
Sample Name	Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2
Sequencing Status	Permanent Draft
Sequencing Center	University of Duisburg-Essen
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008803 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117972 | Gp0126359 | Ga0103770

Sample Name

Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2

Sequencing Status

Permanent Draft

Sequencing Center

University of Duisburg-Essen

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	153856357
Sequencing Scaffolds	18
Novel Protein Genes	27
Associated Families	23

Dataset Contents

Total Genome Size

153856357

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar	3
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

Ecosystem Assignment (GOLD)
Name	Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Ecosystem Assignment (GOLD)

Name

Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → eutrophic pond → planktonic material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	University Duisburg-Essen, Germany
Coordinates	Lat. (^o)	51.46	Long. (^o)	7.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

University Duisburg-Essen, Germany

Coordinates

Lat. (^o)

51.46

Long. (^o)

7.0

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000020	Metagenome / Metatranscriptome	6197	Y
F000023	Metagenome / Metatranscriptome	5736	Y
F000044	Metagenome / Metatranscriptome	3572	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000073	Metagenome / Metatranscriptome	2639	Y
F000076	Metatranscriptome	2620	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000371	Metagenome / Metatranscriptome	1220	Y
F000606	Metagenome / Metatranscriptome	993	Y
F000631	Metagenome / Metatranscriptome	971	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103770_1012639	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	964	Open in IMG/M
Ga0103770_1013769	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	923	Open in IMG/M
Ga0103770_1015170	All Organisms → cellular organisms → Eukaryota → Sar	876	Open in IMG/M
Ga0103770_1016853	Not Available	828	Open in IMG/M
Ga0103770_1017137	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria	820	Open in IMG/M
Ga0103770_1017207	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	818	Open in IMG/M
Ga0103770_1018342	All Organisms → cellular organisms → Eukaryota → Sar	790	Open in IMG/M
Ga0103770_1027529	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	633	Open in IMG/M
Ga0103770_1027556	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	633	Open in IMG/M
Ga0103770_1028899	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	616	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103770_1007882	Ga0103770_10078821	F000044	KHTTNKMKAFILFALIAAASADKAPLQIGQNGRKELRKGRQNGIEVQGGVDFSACQNDPDTGLCCVEKEETVKTIQKDPILECTHKNVEKCHYTYVTQFSPAQEEVCEENFEKTCQITFKQQAFNETVKKCYKPLEKVCNGQGPEQCRTVYESSCTTKYIEKQPGKFVGDTHCEKLPVEICGAGCVTEEGAEECHDKVITSLVDVPEETCDLNPQKTCRFQTKLVPRLKPTAECTTIPKEVCNLKFTQPQEVDKPLKTKWCLDPTPAEPGDKYEEGDALGAPLGAAASTNVQIVAQPEAGFDSQAQFQDEALPSYNENLPQYNNNFRQ*
Ga0103770_1012639	Ga0103770_10126391	F014616	GNTGPDWGFEEFILQKSRYMKKCMDAGVPMAPTIFAEKSERSPESLLTQIKERGWNTFVMKQSESGFCLGFLKLKVEDCEKDPSILTTYFADYENCPEFIVQEAVEGFTRNWETRCFWYNGKFLYAIANMAAVSSGDGAERIITGDDIPQEFLENAKRIGEQALKCLPDIKVQGGGSVPMILVCTDIGCSDGQMYDKDCKWNPAEKTFFLNEIEPSSTTYFVRHLKFDCIPIYGKLYTETARKAKEQMDIAEAARKAREQTDSSAAAKLEKKRAVENADDEAYAKKARCGA*
Ga0103770_1013769	Ga0103770_10137692	F003495	LVTNCDEISKLIKAFPKDIAALDKRIVLAKVNSQGSGR*
Ga0103770_1015170	Ga0103770_10151701	F004726	MTEQQRKPSSFLARLGTFAVAAGAASWALSAPSAFVGALSPSSRSTSTQMKGYRLDWMLEKKDGTSDLQVQDGFFIGERGFEKSQNAQGLRYRMRPTPEEYKKGIEVEGYMVQIGPFKMKLGEAFGGTGNNDKLREIKRKIAKEGITDPAKIAENEYWLKRYGHKRWSEYYVDQSGVRANKGFLRGLAAWSGLDPLKEEKGKTWFEADYGKPWLKKYSDSTIKEKPSKAQFEKEYNSGRLLNK*
Ga0103770_1016853	Ga0103770_10168531	F000606	HRYLFKFQNLLKKMKAALALIFFACVAGSMATDARNPMIEALVQQGQGIAQSVLGQLQQQILGFVQQTVGQLTSLFGSFGRFDFNAIIEQFKPLVNQLINQALGSVAGSLQGLIGGRAGIDLGAIFSEFLAGVTKPLTEIGQHFLNQGLSAVLGSLAGSRGISDLFAGLQQQIGTAVGAAQGALSGALSNLAALGSNLLDASKPHWEQLQEQLIGHGLNALGSLSETINNLHGSITGGR*
Ga0103770_1017137	Ga0103770_10171371	F022887	MEKKLNKWFAMTLDSNNDGLVNWTDFEKAIEAIVPTEDAKKNARLKILRKRVEQNFQKYFWDLCAAGDANGDGNIDLDEWLDVMNEIIKHVKDTNNFPEWYEGLHKSVFRAHEFFGTFIILLKSKILAFLTVDSFFYLDDRNILKTEFADMMATWNVGEAEAEKAFDFITDLGKKKMDYNLFSELMKKFILNETQGHPLNFGLDK*
Ga0103770_1017177	Ga0103770_10171771	F000241	MTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103770_1017207	Ga0103770_10172071	F004094	VSGEELGHTEGTDAVASENLSHLLVGGEELLVLGVLEVVLLDVGPELLDALGAGGLLLADDVSEVGGELHGLGES*
Ga0103770_1018342	Ga0103770_10183421	F004781	TVWIQGRYLPTPATSGLSVTKILAVGGPFLQGHKVHVAPTWTTWDDQRVLEAFPSDYSVPGLIEMHYNNVGEVLQAGREGKALHVVHIKIADGTPEGLLIQVNQWTEPTEGDYINVKITMHQQPGQDGHCGNFNGDPVDDDRLQVRVRMGKNGVDPPELLFKTKTPVVEANRPNINDCPAAALENAHVVCKQREKKFIPSMACLVDVCFGGAAFAKEG*
Ga0103770_1020499	Ga0103770_10204991	F000070	VNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTLKSASHEVDIQKNSDAARKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFP
Ga0103770_1022706	Ga0103770_10227061	F000023	CILELATMEYPYSECKNAAQILKKVSTRLQDFEAQITAQLGNLQTDFDKKLSHVNRGASATKPLDAAGGAAGLDTMAEDLDQLKYDVGELKDLLANNKGEVNHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVR
Ga0103770_1024371	Ga0103770_10243711	F000020	ENEITIKDAQEAQTAVAQALTVLKEFYAKAGEATALLQQEPPAIFDSPYKGMQSENGGVIGMLEVIESDFARLEADTKAAEATAQKEYDTFMTDSKVDKAAKTTDIEHKTAKKQDESQGLIVKKEDLEGTQKELDAALAYFDKLKPSCVDAGVSYETRVEHRQQEIQSLQEALRILNGEDIAL*
Ga0103770_1025502	Ga0103770_10255021	F000073	VEEHANFRTICEEGKGKLQWERDIPQDSLDNLQSLANTDFHKNLGKIVHDIYLTAHNLFMDMPQGDHKKRAKYRFASKTLMRILPDGLKNEVEGLIAKNTITLDLYEILGQCTWGQRSL*
Ga0103770_1027529	Ga0103770_10275291	F004725	PATAGKRSGYSRASIFYGADEYIEELKRKYEQDQEIATMKQILPDEGDPNAGQHAESKDKMLRVEKNNENRSHKTGRLFPTPNKPDPMPQHLAFLFTKITPEQMMYMWRILTLIFVSQCLMVVAYCAALAMFPDYWWTCTLCFGVPFAYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGE
Ga0103770_1027556	Ga0103770_10275561	F001300	YILLSVLLHVFVGLKRTWDMKLALAKSQGIGVLNLAISGLMLLTFMTIHLFQFRFGDTDQFGPYYVRPPPYLINFWGIPSLNLFWTDDPSVEPVGVRDIYALEFQIFKNQFWSMFYVFAVFVFMAHACWGWQKVTPVLGIPKGHVFKVEIVGYLIMIAMGAVYISFPVYVMLTEPFTGYQPAIQVPSDRVGV*
Ga0103770_1028733	Ga0103770_10287331	F000070	KVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFE
Ga0103770_1028899	Ga0103770_10288991	F016241	NATALGGGWYSGGDKIWGSGEGIENVHADNVGYYNAGMAAAHAQCLDPGCALIVNPPGHRTVEVFHIHTVHFGSYGANLKKKLESATCASPGWHGGAPCAGKAAFFPGFPAVFSSAMGGGDIHSASVIAWPASCGGRGTIVQLSFGCSIEHQIRGDFNPKLR*
Ga0103770_1029071	Ga0103770_10290711	F000076	VFLCFSLSPQGPQNMAEEEAQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI*
Ga0103770_1029407	Ga0103770_10294071	F016241	PGNVGYYNSGFAAAHARCGDAGCALIVNPPGHRTVNHFHIHFVHYSSYGANLKKALESKVCRSGGWHGGGLPCGGKATCVDGFPGVMSTAMRGGSVHDASVIAWPGACGGRGTIVELAFGCSIEHQIRGDFDPRFR*
Ga0103770_1029462	Ga0103770_10294621	F017489	RVKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWKKVHDAAVDVLHNGLWLPNGDEETEMQKQQRKRSVLMKSSMNK*
Ga0103770_1029706	Ga0103770_10297061	F004726	RMRPSNQEYAEGKEVDGLLYQFGPFKFKLGETFGGTGNNAKLRALKKQVAEEGITDQSKIEENEYWIKRYGHKRWVAPYVDQSQGTAKTFFRGLAAWSGLDPKKEERGVTWFEADYGKPWLSKYIGTKEKGWVSEEQVQKEYDTGKLLKK*
Ga0103770_1031485	Ga0103770_10314851	F004781	AVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHRLRVETRSAFWDGQAVLTGFPSDYTVPGFVDMHYNAVGELMQNGREGKALHIVHIRLEDGTPEGLQIQVNRWMEAAEGDYINVKITMHKQPDQDGHCGNFNGDPADDDRLQVRARVGKTGVDPSMLMFGTKTPVVEANRPNINDCPAQKLEEAKATCKAREN
Ga0103770_1032381	Ga0103770_10323811	F003455	YATGAASMVQAASQQPAMPEKFEKATGAGTSIIGILEVVESDFATSLSKEETQEADAQSEYDTITQENKVTKTIKDTDLKYKNEELKSLAKAIAELSGDKETTGAELSAVNEYYAKLRERCIAKPETYEERKIRRESEIKGLKEALTILENETAFVQRKTRHGHIRGSLTAH*
Ga0103770_1039854	Ga0103770_10398541	F000631	MQPSTASLVAFLALISAHGAEGSVLRARRAAQEPDTACGKGFENLVKGSQDYYATASVELWTHPYHTMDNATFGQEFQCWFASMCTTKCGGLPSQAAARKSELAKMCKSVEADWLKIWKMFSQEEVVWFKKSYPSSEVQGEQESTVFYKQAMETAKEV
Ga0103770_1040493	Ga0103770_10404931	F000371	SAEKKSTEGLSKPQTLDEANAMFASVNDFDQSCLKHLKILNDAATAANKMTTHKEADTEVKELNDRYLKVKAVSDEWVKKVDTLVKEWKLLDSTVNDLNSWVAKDRGTEGEQQFSLEKMESTLGELKNIFKQKEKLVENL*
Ga0103770_1041584	Ga0103770_10415841	F009877	VVGKNVLRSRLINLLKLIVKAVGQRRDLLEQQNEAANALFEALLKTFNENMTRVDKLLERLSHEKNLLSKRGLALNDSLRRAQRITKLSVKAASTKNRQCHQIKVRNARLHVATQKIRNVVAQIEEILQERFGALKTFFIERKMKFEDKQ*
Ga0103770_1041776	Ga0103770_10417761	F057415	GVMSEDEVCPWTLFLTMALTLLKGVLPHVPRMLPVLISDPEMRERVSETFTSEEFINNIESYFVQNIKNDIQAPINRQIIKSSETIMYFIDVFEGLAKSFFAANDDSGNDLGTTDNKPRSDSGLFSGSALGQVLNFAKVVYNLTK*

Showing 1 to 27 of 27 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008803: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences