3300008802: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-1

Overview

Basic Information

• IMG/M Taxon OID: 3300008802
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126358 | Ga0103769
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100496382
• Sequencing Scaffolds: 13
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000241	Metagenome / Metatranscriptome	1481	Y
F000631	Metagenome / Metatranscriptome	971	Y
F000665	Metagenome / Metatranscriptome	949	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003249	Metatranscriptome	497	Y
F004604	Metagenome / Metatranscriptome	431	Y
F004781	Metagenome / Metatranscriptome	423	Y
F006386	Metatranscriptome	374	Y
F009877	Metagenome / Metatranscriptome	311	Y
F014507	Metagenome / Metatranscriptome	262	Y
F014616	Metatranscriptome	261	Y
F016241	Metatranscriptome	248	Y
F025035	Metagenome / Metatranscriptome	203	Y
F061886	Metagenome / Metatranscriptome	131	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103769_1004235	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1136
Ga0103769_1008054	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	842
Ga0103769_1009342	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	785
Ga0103769_1010125	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	755
Ga0103769_1010982	All Organisms → cellular organisms → Eukaryota	726
Ga0103769_1011113	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	722
Ga0103769_1013016	Not Available	670
Ga0103769_1015410	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	618
Ga0103769_1015590	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	614
Ga0103769_1017214	All Organisms → cellular organisms → Eukaryota → Sar	583
Ga0103769_1019332	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	552
Ga0103769_1022976	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	507
Ga0103769_1023135	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103769_1004235	Ga0103769_10042352	F001926	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYESKRIKIEKLLTLGYTTSGDP*
Ga0103769_1008054	Ga0103769_10080541	F004781	MRADYYSPGEYWIVKSQNVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHRLRVETRSAFWDGQSVLTGFPSDFTVPGFVDMHYNAVGELMQNGREGKALHIVHIRIEDGSPEGLQIQVNRWMEAAEGDYINVKITMHKQPDQDGHCGNFNGDPADDDRLQVRARVGKTGVDVSELMFDTKTPVVEANRPNINDCPAQKLEEAKATCKERERKFIPSMACLIDVCFGGKGFADEK*
Ga0103769_1009342	Ga0103769_10093421	F000631	MQPSTASLVAFLALITAHGAEGSVLRARRAAQEPDTACGKGFENLVKGSQDYYATASVELWTHPYHTMDNATFGQEFQCWFASMCTTKCGGLPSQAAARKSELAKMCKSVEADWLKIWKMFSQEEVVWFKKSYPSSEVQGEQESTVFYKQAMETAKEVNKKELLCLTLFTIDDECVKWPYIRLGE*
Ga0103769_1009351	Ga0103769_10093511	F000241	MTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDASAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVLKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYQGKELKQDGQDGFAR*
Ga0103769_1009685	Ga0103769_10096851	F014616	EHCPEYIVQEAVEGFTRNWETRCFWYNGKFLYAIANMAAVSTEDGAERIVTGDDIPVEFLENAKKIGEQAIKCLPDMQVPGGGSVPMILVRTDVGCSDSQMYDKDCKWDPTKKTFFLNEIEPSSTTYFVRHLKFDCIPMYGKLYAETARKVKEQMEKNSAVKVGDKRAVEANEAECEVKKARCGA*
Ga0103769_1010125	Ga0103769_10101252	F025035	LTTDFDFAGQSGMSGQEEPVMLVVRHAAKKAAAAGEKIMHGDTVYIKVMTGRYVGEIDGTTKLEWVKARGTKKDKEHALTIEKIGNKEEPIQNGDTVMFVMPNGAHMDVCGSAVRARYYDPRGQWQKIVIVKQDGGEIYSGDKIFLRGHMGEYLDSNPLERAPDGEVKARWRDEGDWQIMYIEK*
Ga0103769_1010982	Ga0103769_10109822	F003026	MLTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWRKVHDAAVDVLHNGIWKPNGDEETEMQK
Ga0103769_1011113	Ga0103769_10111131	F016241	TLEEGKNASEESLGFGGWSGGGDKVWGAGRGTESVNPDNSDYYDSGFAAAHARCGGAGCALIVNPPGHRSVNRFHIHFVHYSSYGANLKKALESKVCRSGGWHGGGLPCGGKATCVDGFPGVMSTAMRGGSVHDASVIAWPGACGGRGTIVELAFGCSIEHQIRGDFDPRFR*
Ga0103769_1011728	Ga0103769_10117281	F000241	GDLVPARVSAEYLERCGPKDSDVPFQSSAVNGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVNVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103769_1013016	Ga0103769_10130161	F009877	KNARKQLINAHKAALGTEFVEVKPEVISALSELRVEFTNTEDHFDGLRPIIANLLQNMSSPVVGKNVLRSRLINLLKLIVKAVGQRRDLLEQQNEAANALFEALLKTFNENMTRVDKLLERLSHEKNLLSKRGLALNDSLRRAQRITKLSVKAASTKNRQCHQIKVRNARLHVATQKIRNVVAQIEEILQERFGALKTFFIERKMKFEDKQ*
Ga0103769_1015410	Ga0103769_10154101	F000665	MGAVGVRYSYIVSSAIENEFKHVETMPFLEWHLHRYGRSYGDKRDVYKRPDASNNQSYNAQRAEADMVYCFSYQPSGQKLGKQQIRMPPSLKTLKSCDDGPFKHLQDAAKANLALQLHKRFLTEVSGTHVG*
Ga0103769_1015590	Ga0103769_10155901	F006386	WGSVWLLGSLGMGRPLSDGWKFVGMVSIFARVGFSAAWMFIANFNHSHLWNEFLAHDPDRTWPKLHRTMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWKSDDAETKMDKYQKRRSMLVKSRKNSAAKH*
Ga0103769_1017214	Ga0103769_10172141	F003249	AASGSLLRADRAAWEPESCEELAPGVPCRKLYEHPQGSTFVGPCPTESMANPEGCAAQFEGKPDAEQCPQIYCPKALGVTMKLICGGACCPTCWAPDHVVAMDRHTSLENPVTVPPAPQAPPTCAGARCFEPVCASGFEKGFVQGNCCYSCVPGR*
Ga0103769_1019332	Ga0103769_10193321	F014507	AMFPDYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEG
Ga0103769_1022976	Ga0103769_10229761	F061886	EMQYIAHNPDGLSSEIIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIDNSRDWLVDDGGVVDRVHRMSAKTLKTRYDLDAIKRNMENLKSMRARLLKN*
Ga0103769_1023135	Ga0103769_10231351	F004604	HAGLALFWARRRNKIGVQQQAEASQATPAVSSTYVESAADARLFEQVYLQYTSEYLKGPLYWHPDKSQGVLPDYPGEPLLKDGKLTSNVVGNLKTFSSTELAALAMLFFGIGLYGNLQFLIYDPQWEKVDAGGYFNVSYIVESLLLPISFFMHIAAYIQRMNGK*