3300008799: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-1

Overview

Basic Information

• IMG/M Taxon OID: 3300008799
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126355 | Ga0103766
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103118441
• Sequencing Scaffolds: 11
• Novel Protein Genes: 16
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000081	Metatranscriptome	2481	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000606	Metagenome / Metatranscriptome	993	Y
F004094	Metagenome / Metatranscriptome	453	Y
F004781	Metagenome / Metatranscriptome	423	Y
F014507	Metagenome / Metatranscriptome	262	Y
F027191	Metagenome / Metatranscriptome	195	Y
F030134	Metagenome / Metatranscriptome	186	Y
F040635	Metagenome / Metatranscriptome	161	Y
F041786	Metagenome / Metatranscriptome	159	Y
F061886	Metagenome / Metatranscriptome	131	Y
F080070	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103766_1005487	All Organisms → cellular organisms → Eukaryota → Sar	1095
Ga0103766_1006088	Not Available	1041
Ga0103766_1008041	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	909
Ga0103766_1012503	Not Available	725
Ga0103766_1013802	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	689
Ga0103766_1014420	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	674
Ga0103766_1020136	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	569
Ga0103766_1020263	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum	567
Ga0103766_1020579	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	562
Ga0103766_1024448	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	515
Ga0103766_1025207	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103766_1005487	Ga0103766_10054871	F040635	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIIERIKKRYETKRI
Ga0103766_1006088	Ga0103766_10060881	F030134	KKDKIQPVLQRFKLRSCTFLIVEQTNYICDYNTYEKIIQHRGSSYIYR*
Ga0103766_1008041	Ga0103766_10080411	F004781	HIRTFDNMRSDYYSPGEYWIVKSAAVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHKLFVETRTATWDGQPVLQGFPSDFTVPGIVDMHYNGIGEVMQNGREGKALHIVHIRLEDGSPEGLQIQVNRWMEASEGDYINVKITMHKQPNQDGHCGNFNGIPADDDRIQVRARVGKTGVDPSVLLFDYKTPVVQANRPNINDCPADQLEAAKATCKEREHKFIPSMACLIDVCFGGKGFAAEG*
Ga0103766_1012503	Ga0103766_10125031	F000606	FKFQNLLKKMKAALALIFFACVAGSMATDARNPMIEALVQQGQGIAQSVLGQLQQQILGFVQQTVGQLTSLFGSAGRFDFNAIIEQFKPLVNQLINQALGSVAGSLQGLIGGRAGIDLGAIFSEFLAGVTKPLTEIGQHFLNQGLSAVLGSLAGSRGIADLFAGLQQQIGTAVGAAQGALSGALSNLAALGSNLLDASKPHWEQLQEQLVGHGLNALGSLSETINNLHGSITGGR*
Ga0103766_1013802	Ga0103766_10138021	F061886	MKEMHFLATTEAPASDNLDRGRFRDHYTNDYVWIEKNHVNDVGVRYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIANSREWLVDQGGISDRVHLMSAKTLKTRYDLDSIKRNMDNLKAMRARLLKS*
Ga0103766_1014420	Ga0103766_10144201	F004094	VRADVLGHAEGAELLGTEDLGHLLVGDEELLVLRVLKVVLLDVGPQLLDAFSSGCFLLADNISEVSRELHGLGESGSLRHGEGFLVTEIYGEEKTVKV*
Ga0103766_1015173	Ga0103766_10151731	F000241	MQSAARRPVLSLLLAGGALCALSSGLSFVGAWAPRAERGLVAARVSAGYLERLGPKDTDVPFQPTAGTGPGAEVEFKKRPFGILRYQPGQGGKGAMVMEVIPKSRYPGDPQGQAFLAGVKGGWVVKSVNGQDVLKEPFGKVMDLLDDEVADPRFSKSTAVALQEQGGRLAEPAALPAKVTFATIPGYVYK
Ga0103766_1015315	Ga0103766_10153151	F000241	MTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQFSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103766_1019414	Ga0103766_10194141	F000241	FDSSAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVLKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYQGKELKQDGQDGFAR*
Ga0103766_1020136	Ga0103766_10201361	F080070	VYLQFIQIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIASLNQIIG*
Ga0103766_1020263	Ga0103766_10202631	F041786	FRHSLMTFGDKFTAQECDDAFAEFKIEDGMIDAVHLKSLMVAKKEGEES*
Ga0103766_1020579	Ga0103766_10205791	F014507	AMFPDYWWTCTLCFGVPFAYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEGWRF
Ga0103766_1023056	Ga0103766_10230561	F000007	MHKYYYSFSVDAPEDDLAKEMTHDLSMNFNKIAPFGKEDTARELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH*
Ga0103766_1024161	Ga0103766_10241611	F000081	LELGLTGVRQALTALRNYYGSSSAGKDFSSSFMQQPANIRWGKSTGAGKSIIDILEVVESDFAKNLAKEEMEEADAVSEYEKMTQENSIVRTTKEQDVKYKTQEAASLDKTITELTSDRTTTDAELSAVLEYYAKIKERCIAKPETYEQRSARRAAEIEGLKQALATLSEET
Ga0103766_1024448	Ga0103766_10244481	F080070	KDKKIDFTNKKFNKMKSFIIVLAICVASTLGAHLNAREVAQKDLISTIVSSLGLDQVWSTITSLGSAVYLQFINIGTQLLFAGQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLDQVWATITSLGSAVYLQFIQIGTQLL
Ga0103766_1025207	Ga0103766_10252072	F027191	VKDEREKRLLFKRHKAVRFLISPKKKKVKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQTSKALSGCEKEEIPK*