3300008798: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-3

Overview

Basic Information

• IMG/M Taxon OID: 3300008798
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126354 | Ga0103765
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96139700
• Sequencing Scaffolds: 20
• Novel Protein Genes: 25
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	4
All Organisms → cellular organisms → Eukaryota → Sar	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F000592	Metatranscriptome	1003	Y
F003249	Metatranscriptome	497	Y
F004604	Metagenome / Metatranscriptome	431	Y
F005209	Metatranscriptome	408	Y
F015562	Metatranscriptome	253	Y
F016241	Metatranscriptome	248	Y
F016242	Metatranscriptome	248	Y
F017489	Metagenome / Metatranscriptome	240	Y
F025035	Metagenome / Metatranscriptome	203	Y
F031523	Metagenome / Metatranscriptome	182	Y
F031766	Metagenome / Metatranscriptome	181	N
F039474	Metatranscriptome	163	Y
F040635	Metagenome / Metatranscriptome	161	Y
F041782	Metatranscriptome	159	Y
F061886	Metagenome / Metatranscriptome	131	Y
F067773	Metatranscriptome	125	Y
F070863	Metagenome / Metatranscriptome	122	Y
F080070	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103765_1004753	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1213
Ga0103765_1005316	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1150
Ga0103765_1005871	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	1092
Ga0103765_1008488	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	896
Ga0103765_1013496	All Organisms → cellular organisms → Eukaryota → Sar	693
Ga0103765_1015190	All Organisms → cellular organisms → Eukaryota → Sar	651
Ga0103765_1015709	All Organisms → cellular organisms → Eukaryota → Sar	639
Ga0103765_1016202	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	628
Ga0103765_1016778	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	616
Ga0103765_1017648	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	600
Ga0103765_1017752	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	598
Ga0103765_1018562	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	583
Ga0103765_1018611	All Organisms → cellular organisms → Eukaryota → Sar	582
Ga0103765_1018849	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	578
Ga0103765_1022684	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	523
Ga0103765_1022732	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	522
Ga0103765_1022884	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella	520
Ga0103765_1023390	All Organisms → cellular organisms → Eukaryota → Sar	514
Ga0103765_1024300	All Organisms → cellular organisms → Eukaryota → Sar	504
Ga0103765_1024610	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103765_1004753	Ga0103765_10047532	F061886	MHYLSSAPETSASDNLDRGKFRDHYTNEYVWVEKNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIAHSRDWLVDDGGVVDRIHRMSAKTLKTRYDLDSIRRNMDNLKAMRTRLLKQ*
Ga0103765_1005316	Ga0103765_10053161	F061886	MHYVAHNPDGLSSEVIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIDNSRDWLVDDGGVVDRVHRMSAKTLKTRYDLDAIKRNMENLKSMRTRLLKN*
Ga0103765_1005871	Ga0103765_10058712	F031523	MRKRIHEGMANYLQNKTEDEINTYIKTKVPEIGARVIKHFTDKYVSARDEVERDVQNMKAFYRSQKDIPGKTKADVLKEIWAELPKYSDKPVPPLDEEMLAELAEEPATAEGEFKHSWGTADVLYKSEAIDAFGMKYLLGVFETKAEAQKAFADWNSEYEKARVEMKAEMEQWTKQEQARLDRDTSGQDRIKKVLEEARR*
Ga0103765_1005876	Ga0103765_10058761	F000023	YDVGELKDLLANNKGEVNHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDVARKMEKQRNMDEQNWKAQMDAVHDVLDTK
Ga0103765_1008488	Ga0103765_10084882	F041782	NKHHNSTFDLLNHCEFGWDPAEWLYFFQEWTMKWYGWLTVPLIPLWHFVGANDTGCLFACLWCCRFPDAGAGGKCDKQFYKKWLPVRVKHMCFLGCLWGSVWLLGSLGMGRPLSDGWKFVGMVSIFARVGFSAAWMFIANFNHSHLWNEFLAHDPDRTWPKLHRTMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWKSDDAETKMDKYQKRRSMLVKSRKNSAAKH*
Ga0103765_1009238	Ga0103765_10092381	F000241	RLANFDLPPQVVRMTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVNVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103765_1010096	Ga0103765_10100961	F000241	QLATSGAEPKTANMTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDSSAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVLKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYKGKELKQDGQDGFAR*
Ga0103765_1010940	Ga0103765_10109401	F070863	AALFTVAKIMGSSKAGGNSSNMVLGVLMCLASLLCGSLNLALAGVLGEMKLSVYDTVAYMSVPAFLFLVPFSLFLVKPVPGQWPEVLGYSRATDWQILMKVASIAPSTFSLLLLSGIFSYMYNILQFTIVHTLSPSATAFGGNFNKAALVFLTLILPFLQVHALPGPPYIIVIWVAVIGNVAAFSGYSYIQIQDKLASNNAAEHKEDEKVALTTKAQGA*
Ga0103765_1011521	Ga0103765_10115212	F000306	RTVCTESIEEIPNEVCSFAYQQKEEDTTAKTVEVTFVKEVKVQMVTVCQPGYGGYGGYGGYGASQQYCKEVAQETAFNVPVVTPVDVPVKVAYPEAIRTCVNKPIALPRVACENLTEKKCITVPEIENAVEAVEKCDTQLAAPACQKVELTLPKQVCIELVYGYAEDPAPAYAPAPAYAPAPAYAPVA*
Ga0103765_1013496	Ga0103765_10134961	F003249	QAVWLANYSTQRSLTTSVDTMTYGATSLLALSALVAAASGSLLRADRAAWEPESCEELAPGVPCRKLYEHPQGSTFVGPCPTESMANPEGCAAQFEGKPDAEQCPQIYCPKALGVTMKLICGGACCPTCWAPDHVVAMDRHTSLENPVTVPPAPQAPPTCAGARCFEPVCASGFEKGFVQGNCCYSCVPGR*
Ga0103765_1015190	Ga0103765_10151901	F016242	LQKALLRLEDFYKKNIGKKVVLAQQTPPVQFTIYKDNAGASPVMGLLEQIIEDSKKVEAEATAGEYKSQADYETFVKDSNALIAELTAAVEAKTKATATASGESAEAKGDLESAIGELDSLAAYQADLHGECDWVLKNFEIRQKARLQEMEAIQAAKAILSGAR*
Ga0103765_1015709	Ga0103765_10157091	F031766	HIVHIRIEDGSPEGLQIQVNRWMEAAEGDYINVKITMHKQPDQDGHCGNFNGDPADDDRLQVRARVGKTGVDVSELMFDTKTPVVEANRPNINDCPAQKLEEAKATCKERERKFIPSMACLIDVCFGGKGFADEK*
Ga0103765_1016202	Ga0103765_10162021	F025035	LTTDFNFAGQSGMSGQEEPVMLVVRHAAKKAAAAGEKIMHGDTVYIKVMTGRYVGEIDGTTKLEWVKARGTKKDKEHALTIEKIGNKEEPIQNGDTVMFVMPNGAHMDVCGSAVRARYYDPRGQWQKIVIVKQDGGEIYSGDKIFLRGHMGEYLDSNPLERAPDGEVKARWRDEGDWQIMYIEK*
Ga0103765_1016778	Ga0103765_10167781	F061886	MHFLATTEAPASDNLDRGRFRDHYTNDYVWIEKNHVNDVGVRYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIANSREWLVDQGGISDRVHLMSAKTLKTRYDLDSIKRNMDNLKAMRARLLKS*
Ga0103765_1017648	Ga0103765_10176481	F080070	DLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGSQIWAQVKPVLAQLVSDLTNHAGDAVTIVAQTI
Ga0103765_1017752	Ga0103765_10177522	F040635	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIIERIKKRYETKRIKI
Ga0103765_1018562	Ga0103765_10185621	F015562	MQPTLSTVALLLGPICTAHAASFRAAAGYPVFSPGAGGTIETCGGITCKELDCKPPFVFKSPKETGTCCPLCLAESVKVPDDRSWANGLSGGVGMNNNADSVLCRGVMCPPTDCPEYDQHFDGRCCTKCKSSMMVTPADFAKEYEELP*
Ga0103765_1018611	Ga0103765_10186111	F005209	MAPSRATVLIFAVMAALLQPQLVTAVGRADAVRKMIAARNLEVAGLPDPTCATGVIAMKVGDTPQVCCAGYCGECSDYPTCMSVRGQNSTNACCKTQVYELRCGNAPANVCLKPCTESVPPCIMEDGKTFTTPDPSARTAGQDCNKAVADWRQKAVAATKPQQSK*
Ga0103765_1018849	Ga0103765_10188491	F016241	GEWKAQEGKNASEEGLGESWSPGGDKMWGDGAGTENVNPGNVGYYNSGFAAAHARCGDAGCALIVNPPGHRTVNHFHIHFVHYSSYGANLKKALESKVCRSGGWHGGGLPCGGKATCVDGFPGVMSTAIRGGSVHDASVIAWPGACGGRGTIVELAFGCSIEHQIRGDFDPRFR*
Ga0103765_1022684	Ga0103765_10226841	F004604	TMVRAEGTEVVKTAPDAAVDRLFEQVYMDYTSEYLKGPMYWHEDKLQGFLPDYPGTPMFKNGKMTSNATGNLKTFGSNELAFLSVLFLGIGLYGNLQFAYYDPQWPKIDAGLGFNPSYVVESFFLPISFFMHIAAYIQRMNGK*
Ga0103765_1022732	Ga0103765_10227321	F017489	LSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWKKVHDAAVDVLHNGLWLPNGDEETEMQKQQRKRSVLMKSSMNK*
Ga0103765_1022884	Ga0103765_10228841	F067773	VKMGTDEWKALANPDFKGTVGGNYDGALDTGHKEGMQTFGENYEGQQDENQYGVLALLEVIQSDFANLEADTAAAEVEAEKGYETFITESEKNKAVKEKNIEMSTADKATTEAKLQEDIADLKSTQDELLAADRYHEKLVPQCIDQGMTWDVRVKAREAEIASLKMALKILSS
Ga0103765_1023390	Ga0103765_10233901	F039474	QAFGYGDPCPPGAPGFGGEHQQAPPETVQNTVRYISENMTNPPKYKEIIEGFGYPGMKHSLAGGLLTIGRIYYGPGRYDYGRPKMPKGWIANFFYPAWEFLHILFVTDRYIMWRLIRNVGATLLCWIPLDMYYEYNKAYKKEYKAKYGSI*
Ga0103765_1024300	Ga0103765_10243001	F000592	MKAALIAAVAWLAVLAEAALQFRAGQPIYSGKVDSDANFAVSAQDGKPARMPGYRSAWDDCGGIGASATERMRTIAAKIKGWAKPLPFVRHAAQDCGSKDQTGTVPGPGERVNYPGPEIPRAAREGLEKAADTLAKYPAAAKKKAEYVGYLY
Ga0103765_1024610	Ga0103765_10246101	F080070	VLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLDQVWATITSLGSAVYLQFIQIGTQLLFAGSQIWAQVTPVLNQLKDDLINHTGDAVTIVAQTIASLNQIIGGSGKRDLVSTIVSSLGLDQVWATITSLGSSVYLQFVQIGTQLL