3300008797: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-2

Overview

Basic Information

• IMG/M Taxon OID: 3300008797
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126353 | Ga0103764
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83801295
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000241	Metagenome / Metatranscriptome	1481	Y
F000577	Metagenome / Metatranscriptome	1015	Y
F014507	Metagenome / Metatranscriptome	262	Y
F022887	Metagenome / Metatranscriptome	212	Y
F031523	Metagenome / Metatranscriptome	182	Y
F041782	Metatranscriptome	159	Y
F061886	Metagenome / Metatranscriptome	131	Y
F080070	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103764_1004183	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1130
Ga0103764_1007721	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	837
Ga0103764_1009000	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	772
Ga0103764_1010063	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	729
Ga0103764_1011885	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	666
Ga0103764_1012983	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	637
Ga0103764_1013584	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	623
Ga0103764_1015171	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103764_1004183	Ga0103764_10041831	F000577	MVEETEYDDVIECKHSYSERCHTTYTTDFEPQQEEECEENFIKNCFIEYKKVAFDEKIKFCHTPLVCQGEGPEECKTVYESMCETRYHEHDVEDDVVDCETIQDEKCEDVTQGYTTEKKCTKWPRQVCKTEKKQVKKYSPETECKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEENCNLEPQRSCKHVTKLVPLLKPQEECVDIPKEVCSRSRTNPRKVQKPVVKKWCYVPTKESGLA*
Ga0103764_1007721	Ga0103764_10077211	F014507	SKDKMLRVEKNNENRSHKTGRLFPTPNKPDPMPQHLAFLFTKITPEQMMYMWRILTLIFVSQCLMVVAYCAALAMFPDYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMLTVSFFARLGFSAAWMFI
Ga0103764_1009000	Ga0103764_10090001	F041782	VTFPPYEWQNYITHPFADFISLPWMDIIMEHNKHHNSTFDLLNHCEFGWDPAEWLYFFQEWTMEWYGWLTVPLIPLWHFVGANDTGCLFACLWWCRFPDAGAGGKCDKQFYKKWLPVRVKHMCFLGCLWGSVWLLGSLGMGRPLSDGWKFVGMVSIFARVGFSAAWMFIANFNHSHLWNEFLAHDPDRTWPKLHRTMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWKSDDAE
Ga0103764_1010063	Ga0103764_10100631	F080070	DLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGSQIWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQF
Ga0103764_1011885	Ga0103764_10118851	F022887	MATKRSNISKIMEKKLNKWFAMTLDSNNDGLVNWTDFEKAIEAIVPTEDAKKNARLKILRKRVEQNFQKYFWDLCAAGDANGDGNIDLDEWLDVMNEIIKHVKDTNNFPEWYEGLHKSVFRAHEFFDDRNILKTEFADMMATWNVGEAEAEKAFDFITDLGKKKMDYNLFSELMKKFILNETQGHPLNFGLDK*
Ga0103764_1012983	Ga0103764_10129832	F031523	DEINTYIKTKVPEIGARVIKHFTDKYVSARDEVERDVENMKAFYRSQKDIPGKTKADVLKEIWAELPKYSEKPVPPLDEEMLAELAEEPATAEGEFKHSWGTADVLYKSEAIDAFGMKYLLGVFETKAEAQKAFADWNSEYEKARVDMKAEMEQWTKQEQARLDRDTSGQDRIKKVLEEARR*
Ga0103764_1013584	Ga0103764_10135841	F061886	EEKKREEERQKRSKTEMHYLSSAPETSASDNLDRGKFRDHYTNEYVWVEKNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIAHSRDWLVDDGGVVDRIHRMSAKTLKTRYDLDSIRRNMDNLKAMRTRLLKQ*
Ga0103764_1013868	Ga0103764_10138681	F000241	GPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103764_1015171	Ga0103764_10151712	F061886	QSVSAELLNRRQKREEDRQQRAKTEMHYVAHNPDGLSSEVIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIDNSRDWLVDDGGVVDRVHRMSAKTLKTRYDLDAIKRNMENLKSMRTRLLKN*
Ga0103764_1015931	Ga0103764_10159311	F000241	MAMEIIPKSRYPGDPQGQAFSSGVQSGWVVKSINGQDVLTEDFGKIMDLLDDEVADPRFSKSTALALDKQGGRLVQPADTPLSITYAEVPGYVYKGAALKADGQDGYAR*