Sample 3300008793

Basic Information
IMG/M Taxon OID	3300008793 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117964 \| Gp0126287 \| Ga0103698
Sample Name	Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-2
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008793 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117964 | Gp0126287 | Ga0103698

Sample Name

Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-2

Sequencing Status

Permanent Draft

Sequencing Center

University of Tennessee

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	10363816
Sequencing Scaffolds	20
Novel Protein Genes	24
Associated Families	24

Dataset Contents

Total Genome Size

10363816

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → freshwater lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	western basin of Lake Erie, USA
Coordinates	Lat. (^o)	41.46	Long. (^o)	-82.71	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

western basin of Lake Erie, USA

Coordinates

Lat. (^o)

41.46

Long. (^o)

-82.71

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000051	Metagenome / Metatranscriptome	3266	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003024	Metagenome / Metatranscriptome	512	Y
F004758	Metagenome / Metatranscriptome	424	N
F004780	Metagenome / Metatranscriptome	423	N
F013061	Metagenome / Metatranscriptome	274	N
F018374	Metagenome / Metatranscriptome	235	Y
F018650	Metagenome / Metatranscriptome	234	N
F019090	Metagenome / Metatranscriptome	231	N
F022592	Metagenome / Metatranscriptome	213	N
F027111	Metagenome / Metatranscriptome	195	N
F030134	Metagenome / Metatranscriptome	186	Y
F030674	Metagenome / Metatranscriptome	184	N
F031358	Metagenome / Metatranscriptome	182	Y
F047477	Metagenome / Metatranscriptome	149	N
F049428	Metagenome / Metatranscriptome	146	N
F057919	Metagenome / Metatranscriptome	135	Y
F059638	Metagenome / Metatranscriptome	133	N
F063336	Metagenome / Metatranscriptome	129	N
F069657	Metagenome / Metatranscriptome	123	N
F075666	Metagenome / Metatranscriptome	118	N
F098724	Metagenome / Metatranscriptome	103	N
F102145	Metagenome / Metatranscriptome	102	N
F102592	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103698_101022	Not Available	1591	Open in IMG/M
Ga0103698_101059	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1546	Open in IMG/M
Ga0103698_101075	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1523	Open in IMG/M
Ga0103698_101078	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1519	Open in IMG/M
Ga0103698_101272	Not Available	1316	Open in IMG/M
Ga0103698_101378	Not Available	1213	Open in IMG/M
Ga0103698_101525	Not Available	1107	Open in IMG/M
Ga0103698_101855	Not Available	939	Open in IMG/M
Ga0103698_102058	Not Available	861	Open in IMG/M
Ga0103698_102059	Not Available	861	Open in IMG/M
Ga0103698_102724	Not Available	697	Open in IMG/M
Ga0103698_102749	Not Available	693	Open in IMG/M
Ga0103698_103106	Not Available	629	Open in IMG/M
Ga0103698_103225	Not Available	613	Open in IMG/M
Ga0103698_103247	Not Available	610	Open in IMG/M
Ga0103698_103388	Not Available	588	Open in IMG/M
Ga0103698_103508	Not Available	573	Open in IMG/M
Ga0103698_103786	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	543	Open in IMG/M
Ga0103698_103874	Not Available	533	Open in IMG/M
Ga0103698_104035	Not Available	517	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103698_101022	Ga0103698_1010223	F102145	MMVSYKIHVLKILAEKMATEKQEATETLLYNFDYPMVTECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWIPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQL
Ga0103698_101059	Ga0103698_1010591	F018650	LAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRVSDSIIRINENTCLTSLFGFKYFHRSQIEHLLKKITKFLGRKNSMIQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
Ga0103698_101075	Ga0103698_1010751	F057919	MRVSMHEIFSLFGFFTLLTIAVQLISGTMLAFSLVPESMLIPMVRDEEDIEDLYTDDFF*
Ga0103698_101078	Ga0103698_1010782	F001926	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIIERIKKRYERKRIKIEKLLTLGYTTSGDP*
Ga0103698_101173	Ga0103698_1011731	F098724	LDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVLQNEEAMMVSAVPGQTGRQESSLRCRQMVAAENEGQCFRLNVLYDWGASVSMISEEAVEVMGLISTKQAKRIIKGLGGATTVSKGTCTLGLVARNGDRKTVTAWEVGEIASLPGGEPPEDVDEQFPGLRYLSEPNCLIQKAGPIHVLLGMDHAHLMPEHVAESADLSSQLRLMSSMFGGQHILVGEGAPRLSWVDAMDADERYEAAANRRRKREDCRKMAQEARQTALK
Ga0103698_101272	Ga0103698_1012721	F102592	KLIKNQFLLNYTTHNNLIVFSDMNVVDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYSNDFLYKHGLTCVINQIPTNDTLLHIKVFNHKLLPLTFEKESLQFICHTVLAKYP*
Ga0103698_101378	Ga0103698_1013781	F031358	RIDTQGSPVGMLVLDRTDTKGSPVGTPTTDRIDIRDSPVGMQTTDRIDTLGSLAGISLDLDTIKGLPVGDSQHLASGLHLETGVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS*
Ga0103698_101525	Ga0103698_1015251	F030134	SFRTKMIKYKEKDKIQPVLQRFKLRSCTFLIVEQTNYISDCNLYEKIIQHRGSS*
Ga0103698_101855	Ga0103698_1018551	F022592	HSQSPWGLEANRDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAREAKNMALELRQKHLDAKLQVKDRPARVPREFAGGPTGPGPGRWRGYCGPRFSGRLEDLREFRRSWEEYGRQYLPTEPEGVLMEILHTQALGPKARRAAEQAHSLGTTWTYLEEH
Ga0103698_102058	Ga0103698_1020581	F049428	YYLHSDALLHHIWKINQKKFPTFQDLTEQLQSTSREIRNKQVDTAHVLKFITWTLNINITVVKIIFRLPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQL*
Ga0103698_102059	Ga0103698_1020591	F027111	MDIASYYGIVSYAVGVSLILSVAGIKSGRRFFHLFNRRRRHAARHTGQILGNGNDVRVNHRPPPRDQEELLELGDLMMGGMESVNRDRVFTDNPEVSGQESGRGSTSRF*
Ga0103698_102509	Ga0103698_1025091	F000051	KSSAGTMLPEDRVARTMDLQEDIASKVEILMTNAATELELLPQGDKVPSDAQEYKDELNRITKYVTDLQARTKKECDNFSEDVKYWAEYRTGIKEFTPWLVKSEGGCSEGLTKPSNLDEVKQLHEKVTNFDKTCLSYLKVLEAAETASKKMTTHAEADKEVAALKARYAVVKSTSDGWVSKVDTLLKEWTLLDNTVTELNTWVAKDKSSEGENQFSLEKMESTLGELKNIFKQKEKLVENL*
Ga0103698_102724	Ga0103698_1027241	F019090	PCKNRETFVYICSDRYLRTPVLPDEGEKFSLDNFVTEKTMPFFAQGMGTVLCPICLYSSTSASEVMLPAFFGRKAFVQHYRELHWDHSIASGLSSPTQLGTRIYQAHLVYTLCIAHLCLSGAMEDNVNGHPFLSLAGVRFSTHLRKVLVAPTIPMEDQDSEEYCEVTALAEEMMRPSGSHHE*
Ga0103698_102749	Ga0103698_1027491	F004780	PEFINPFTVYYVKTIPIAHNTTNRIYTTLKLENKYVAVDPAGSTFLYNPETCATKNTVTTCNPAMLEIHKEAQTCIEALMSPSQIGAGKCIQSMKVEKVDQQSYIYKTENTVIRIFSPFPDTVSTLCGHTLNQNAGTLKEGYTDLSFKSDCVLYTSQMVIYSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLNIDIQNELMDLSNVNEVLQKA
Ga0103698_103106	Ga0103698_1031061	F075666	VEFLSEELKKLLMEIEEVQGLEAGTLGEEIEARLRGVTEPSVEKLREALKEEIEKLEERFNVQKRKDGTSESPGNPTRTGTGVDPGGTPKPVEAPDGGVPGGRGGIYVPEKDNTLKVLPAPEARSLRSRENEAAQQFKYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDRALDDVRGHALPQKEEG
Ga0103698_103225	Ga0103698_1032251	F069657	MSDSSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYELVSPEWSSRPIPTYRKPSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVSSNQASQPNQIGKSCATGVGSTQVRRDESFAKF
Ga0103698_103247	Ga0103698_1032471	F003024	MVRAGDNPMQKLAMMMAVMILGMSPAHAYSISADPGSREVGGLMEMMPPLARVYSDDWTLTARNTVSSVVTEGYRPVEPGGYFVERTLQQAQLGIEDLERTRNRILRSGQVEAEEAPGEPRERNQVYRLEGEATPKTTEALRRGAD
Ga0103698_103253	Ga0103698_1032531	F059638	KIEKLPIKALVDTGSTHCLMSVKAFQKLENLPFTPLKVHMKVAGSVLHDNVVGSTICMTSFTTSEGEVTIPLTFLIAHALNGYEAILGATLLMNPDMTMAITPTHLCLTPEYNNANIVLETVKKRIQGNFMQCERTVIPPGATLNIEATVSPPFSSLREGKVETTTVSGDYAILDCIQTSLNSVLCTVKNSSEKKLIFNQSS
Ga0103698_103388	Ga0103698_1033881	F030674	MREEKGPGRKINGLFCWTAKDSLILHEVAKAAGLEGRGYGKKVDSLYVRDMESTCAYCVPLVDWKGEVQYLWARGVDYIARLAGKEDPRKWYAQFSELAMARDTEAERKAPIEMMIALDNWKWMPVRQPLRLYEYSHDKKVKNRRAQARTQFGKRLLLLPLVEASEVIPAEEEDDEEYIEKGA
Ga0103698_103404	Ga0103698_1034041	F063336	KEIMKDENEFLKIEDYLGPRKIGINSLAINLISTPIDRAHQTFELQEFENALLEKISPTLQSKLPTIQLSQSNLKNQDKEERIQSRETKLTEPYITEQEVSALLAADLSMNRKLTVESFQYFQNMDPVISAIKENLVGKNTPPAYTMKKGIVCKIFKETESQEPRQVIYIPTSLLIPTIIYIHKHFLHPARSQTY
Ga0103698_103508	Ga0103698_1035081	F004758	TITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGITKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPTEDLQFGQSKETILVFQANIAPVDSLLDNDITPI
Ga0103698_103786	Ga0103698_1037861	F018374	VSFGAIAAAKAGADGKRCIDKVEMVEETEYDDVVQCDHSYDKRCHTTYVTNYESQQEEECEENFRKNCFIEYEKIAFNETVKVCRTPLVKDCAIKGPEICRTEYESECWTKQEVHDVEDDVVECETVQDEKCEDKTAGYTSFTKCSKWPREVCKTAKKKVKKYSPITGCTKEPRELCAPA
Ga0103698_103874	Ga0103698_1038741	F013061	MFDVLAKYKLIWACKTTYQHLEKHVKAVHPKQHQTYKELMAKKSGYKRKRSPSPNQSTSESPKVDHSVSKRIKTPGGGGTPVLSFYSQQDYDEDAVIEVVMNMLPFEVCAML*
Ga0103698_104035	Ga0103698_1040351	F047477	PKSANTMENAWTRLDAWFGDKNLFIKDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGALGMLLIPANVELMVLPLTTWEKRLWREAQGKLAAEDRSWYMSRFVNERLKYAINMVATSERHVLPKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKDSGSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008793: Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences