3300008782: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 125m_>1.6micron

Overview

Basic Information

• IMG/M Taxon OID: 3300008782
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117950 | Gp0126186 | Ga0103597
• Sample Name: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 125m_>1.6micron
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2324584
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine oxygen minimum zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 18.9
  • Long. (^o): -104.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000077	Metagenome / Metatranscriptome	2584	Y
F000267	Metagenome / Metatranscriptome	1412	Y
F003052	Metagenome / Metatranscriptome	510	Y
F005881	Metatranscriptome	387	Y
F093215	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103597_10361	Not Available	756
Ga0103597_10499	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	675
Ga0103597_10846	All Organisms → cellular organisms → Eukaryota → Sar	576
Ga0103597_11195	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103597_10361	Ga0103597_103611	F003052	GSSAHQVCSLPIVLFNTMRAVSLAIVGVAAAQNPDQPHLAQAWIAKSTGDGLPGAVGDEAYLVVDNEAHHLWDYGTDGQKLWTCPKGNPSCVAYYLKLNGPNCCKCDQNIGKPKPWDIPESGFLTKVNFVAYEDTTELYDHQVKGAEHWYESTGIPQVVSITYDYFLHREDSGDVVSHRIDFDTTVQQSGSILYGNFSVQHDIDAHRERFAVPNECKGNILDCCDSRDEIMAKWFKHDHAVGQGKKAMTV*
Ga0103597_10499	Ga0103597_104991	F005881	MRGAATLALLFGADALEHRVNPIRKVVTMLQMMQNKVEADGAKAEAIFEKSMCYCENAETLLGGAITAAENKIPQLESGIKEDIAEKKQLEADLKAHKADRAAAKAAIEKATGLREKEAAAFAKEKGDSETNIAALAKAIPAIEKGMSGFLQTNSASVLRSLSVSMDMSSVDREMLASFLSSKTGYAPASGEIVGILKQMDDEMKADLASATE
Ga0103597_10846	Ga0103597_108461	F000267	RPNKIEALTASSARLNTEIKNLEKEVAENQEALDQATAIREKELAEFNAEEKDSLQAISALKSAITVLSKHHGGALLQMPRSHLETIASTIQYQMQKHAGVLQGVLTHTERKAIAAFIQAPQDYFDASPTFKQSYAPQSGEIFGILKQMKESFESNLSDSQKEEMANQKAYEDLKAAKTEEIKAGQDQIDT
Ga0103597_11053	Ga0103597_110531	F000077	DMKARKGTRAKEHADYAAESTDYAESVSALERAIHTMSKQDYDRPGSAAALLQVSQDSRMPEKAKDVIAAFLGYSDGSDDDGFGDYAAPEANAYEFQSGGVIEMLEKLLDKFIAERTTLEKEEMNSKHAYDMLMQDLKAQIAQATQDRDEKSEFKAETLQSKADAKGDLEDTTSTRDAD
Ga0103597_11195	Ga0103597_111951	F093215	AGERCIDKVVMVEETEYDDVVTCKHSYSEKCHTTYTTDFEPQQEEDCEENFVKSCFIEYKKVASEEAVTFCHTPILLEGDGPEVCQTVYESACTTRYQEHDVDEDRVECETIQEEKCEDVTQGYTTEQKCTKWPVQKCKASNENVKKYSPETECKKVPREICGAGTTQVP