3300008779: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 30m_>1.6micron

Overview

Basic Information

• IMG/M Taxon OID: 3300008779
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117950 | Gp0126183 | Ga0103594
• Sample Name: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 30m_>1.6micron
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 704556
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine oxygen minimum zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 18.9
  • Long. (^o): -104.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F036277	Metagenome / Metatranscriptome	170	Y
F065812	Metagenome / Metatranscriptome	127	Y
F090440	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103594_10267	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	580
Ga0103594_10334	Not Available	539
Ga0103594_10382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103594_10267	Ga0103594_102671	F065812	MGDILLPRLNMDGKPIANKYCEGKVKRTLRRRLKDLKPLKRKV*
Ga0103594_10288	Ga0103594_102881	F000155	LLLQMKFAAALIATVAANRYESMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0103594_10334	Ga0103594_103341	F090440	SLGGNEISGLKLATDLRLKRIYHCWNTDVGEGHDLRIISHKSIGG*
Ga0103594_10382	Ga0103594_103821	F036277	PGSNSPLCSNPFVDKSTQYELHSPNKNKIDLSYLGSASLDD*