3300008778: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 300m_0.2-1.6micron

Overview

Basic Information

• IMG/M Taxon OID: 3300008778
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117950 | Gp0126182 | Ga0103593
• Sample Name: Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 300m_0.2-1.6micron
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1579973
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine oxygen minimum zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 18.9
  • Long. (^o): -104.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006509	Metagenome / Metatranscriptome	371	Y
F030135	Metagenome / Metatranscriptome	186	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103593_10443	Not Available	724
Ga0103593_10523	Not Available	674

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103593_10443	Ga0103593_104431	F030135	ATLSSFTDIWHSTYVGCQFPDAILPGTEAFDLVAGPLS*
Ga0103593_10523	Ga0103593_105231	F006509	PGNVITAITNLVSNAGVVATDTAGVGTARQILGACEYGEDKGIFGFGWTGSYVSMTNLVSNVGVVATDTAGVGGTRDGPAACEYGEDKGIFGFGNTGSVTGVTNLVSNAGVVASDVTAVGTARKVVAACEYGGDKGIFGFGNTPTYVSTTNLVSNAGVVASDVTGVGTDRRALAACSYGFDKGIFGYGNAAKSMTNLVSNTGVVSSDVAGVGTGRQAPAACEYG