3300008746: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008746
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053071 | Ga0114084
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185624337
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. DNF00663	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F085821	Metagenome	111	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114084_1000262	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44413
Ga0114084_1000711	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	24474
Ga0114084_1000759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	23598
Ga0114084_1001007	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	19420
Ga0114084_1001221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	16681
Ga0114084_1004146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	5738
Ga0114084_1004575	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	5254
Ga0114084_1005143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4764
Ga0114084_1008992	All Organisms → cellular organisms → Bacteria	2885
Ga0114084_1021851	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1353
Ga0114084_1025970	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1161
Ga0114084_1034940	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	901
Ga0114084_1048295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. DNF00663	681
Ga0114084_1057084	Not Available	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114084_1000262	Ga0114084_100026231	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRAFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0114084_1000711	Ga0114084_100071111	F077403	VGHAEEGISVRFEVHWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDASRPEKYNLTYYVPRWATYPLKGAGHSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGGWQFLLPDWEASGRLRDERIPLNVYQLRGKDSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0114084_1000759	Ga0114084_100075916	F022002	MSRRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0114084_1001007	Ga0114084_10010076	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEERSLTHYVPRWATFTLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGVSNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGQVRGDSIWIEM*
Ga0114084_1001221	Ga0114084_100122110	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGRKIRTRDWVKVDFSDQNNLHIIGFGDSLILENRLVYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKRYKLPRTRRTTGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYHHPEAHMIH*
Ga0114084_1004146	Ga0114084_10041466	F097526	MTTNDTKAITIYTQDDYRRLCERLDDDTVAALLHAHIRAFAADGNWQLLKRLTEAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTAQCERNGRCDTDTELSVARDGAYGFAAALRDIPLNEKQTVLLWRMAVLTIAEITDATPSLVAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0114084_1004575	Ga0114084_10045751	F030786	MKRTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGSTMGTKKISLTDITEGDDSKEGVIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0114084_1005143	Ga0114084_10051436	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASRKEDVAKHSKTLNNEYNQNVNLLYEYCRALLYTAETTQSQQELVAETQNHIALLKDLYKKVNKIK*
Ga0114084_1008992	Ga0114084_10089924	F097526	MTENSTMATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKACRVGDPTPAEQARCERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELPVARDDAYGFAAALRDIPLTAPQINLLWRMAVLTVAEMTDTTPSLAACYLNGTAGEHLGRALVEKTVYPVTVVSQFAWLLSWTA*
Ga0114084_1021851	Ga0114084_10218511	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEAVISDSGIQYKKVVTQEYHYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK*
Ga0114084_1025970	Ga0114084_10259701	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILACAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRIIFG*
Ga0114084_1034940	Ga0114084_10349401	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNMPKNWEAFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIITKEFGKKSIYE*
Ga0114084_1048295	Ga0114084_10482952	F040149	AKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDTSVPKGHALTAVRERETVVMQLLNIHRMF*
Ga0114084_1057084	Ga0114084_10570841	F053092	MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQLFGVLVPKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTKLVAELADTTVIAGSDLTDPVAKDTLSKARLLDVFVSI