3300008743: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053067 | Ga0114022
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191034425
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F049707	Metagenome	146	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F084362	Metagenome	112	N
F092230	Metagenome	107	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114022_1000037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	100149
Ga0114022_1000100	Not Available	64776
Ga0114022_1000253	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42715
Ga0114022_1000261	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	41771
Ga0114022_1000648	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	23475
Ga0114022_1000839	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19981
Ga0114022_1000895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	18909
Ga0114022_1009030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3287
Ga0114022_1016015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2057
Ga0114022_1026740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1308

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114022_1000037	Ga0114022_10000372	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0114022_1000037	Ga0114022_100003787	F063777	LKVLNIKISALPPENNSFWMKLLLFLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINSYNNKEQIEIAISE*
Ga0114022_1000100	Ga0114022_100010067	F084362	MNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0114022_1000253	Ga0114022_100025323	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*
Ga0114022_1000253	Ga0114022_10002536	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0114022_1000261	Ga0114022_100026138	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLVSYNKDVGDFFEQEMGNAFLKMLENESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114022_1000648	Ga0114022_10006485	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRIIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*
Ga0114022_1000839	Ga0114022_10008398	F101360	VSKEDALRRAVIAAHVAKVASQEKKKALKKLEEVMVPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKAFVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTPNPRISARVSPAQEEAIQELIATGDISLIEIEAPE*
Ga0114022_1000895	Ga0114022_100089519	F040685	MKKLLFKLFFTLAFTSISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNMPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYNLLQIIAKEFGKKSIYE*
Ga0114022_1009030	Ga0114022_10090306	F063778	SEEAKQELLQKLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTTARGYLKACADQIEYAISNVKAIPLDPPPED*
Ga0114022_1016015	Ga0114022_10160153	F097526	MATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPTPEEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCERNGRSDTELPVARNDAYGFAAALRDIPLTAPQINLLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQ*
Ga0114022_1026740	Ga0114022_10267403	F092230	MVDKLKTHLLKAFLPLFIVCIIFVAFFRQIDCGSEWGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSAGEVQNTEEREALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILITIVIIAGYYSYLNPETVYEFYCKLRRKEKYSSDVNLVKRIGFLTIILPPCMLFLLIL*