3300008730: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053054 | Ga0113886
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145327644
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F055792	Metagenome	138	N
F071328	Metagenome	122	N
F092230	Metagenome	107	N
F095633	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113886_1001618	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7212
Ga0113886_1003095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5030
Ga0113886_1009351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2530
Ga0113886_1039422	Not Available	820
Ga0113886_1040183	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	805
Ga0113886_1042492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	769
Ga0113886_1053170	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	632
Ga0113886_1059639	Not Available	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113886_1001618	Ga0113886_10016186	F033081	MHTDMHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFCVVAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGGVFLMGDFTNYTPSQKILHKIKATRYEVYNIILFLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0113886_1003095	Ga0113886_10030951	F045567	VCQRDGRDTLTEELEGGITPLFYRAEGEARRPWIRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSDRGYVVERVVR*
Ga0113886_1009351	Ga0113886_10093511	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0113886_1039422	Ga0113886_10394221	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHDQSSIYI
Ga0113886_1040183	Ga0113886_10401831	F046432	MWEMTENELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAISRKIETLENASDADDEISKYL
Ga0113886_1042492	Ga0113886_10424921	F046433	PDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE*
Ga0113886_1053170	Ga0113886_10531701	F095633	CGNMGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPVLKKYPDGKLYPTREAYVISAIDVDANGSQEVDFNIIYGGLN*
Ga0113886_1059639	Ga0113886_10596391	F055792	GEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGNILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTNLLQLMGIIARKYQLFHTFV