3300008729: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008729
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053053 | Ga0113885
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67227661
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F071329	Metagenome	122	N
F095632	Metagenome	105	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113885_100066	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43941
Ga0113885_100170	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	24751
Ga0113885_100239	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19777
Ga0113885_100596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10154
Ga0113885_100614	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9971
Ga0113885_100655	All Organisms → Viruses	9505
Ga0113885_100661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9448
Ga0113885_100835	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7860
Ga0113885_100870	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7658
Ga0113885_101001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6912
Ga0113885_101108	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6505
Ga0113885_101707	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4804
Ga0113885_101746	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4726
Ga0113885_103418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2809
Ga0113885_105741	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1927
Ga0113885_115588	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	844
Ga0113885_120698	Not Available	663
Ga0113885_128062	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113885_100066	Ga0113885_10006628	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPGLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL*
Ga0113885_100066	Ga0113885_10006637	F071329	MLPVAKIIIAGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0113885_100066	Ga0113885_10006643	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNVEGVITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0113885_100170	Ga0113885_10017021	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLRVDC*
Ga0113885_100239	Ga0113885_10023917	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0113885_100239	Ga0113885_10023919	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTDGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0113885_100239	Ga0113885_10023920	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0113885_100596	Ga0113885_1005963	F043990	MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEICIYNQIF*
Ga0113885_100614	Ga0113885_10061411	F049707	VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPDTGWTVWYFRLEDGRVMTFRALEWEQRDDVNHLTTIYFAPKQKENS*
Ga0113885_100655	Ga0113885_1006553	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYAVEDSVIASFGLKRFEEIFDAFAMMSERGWRLWQTSANAYVDGELRTVPAIGAHYRGL*
Ga0113885_100661	Ga0113885_1006611	F059076	KVGINTTSPTRTLTIKNSTANDGKPLLRLVDAPIYNKNISSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0113885_100835	Ga0113885_1008353	F051214	MGYRSLKGAHMPGKIVAHHTHLRIDTEFIELKDCFEAFRRGVEYKEKNDIDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENITLKPIYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0113885_100870	Ga0113885_1008703	F042387	MKRIILFFMTGLFLISCSRENDKMTNETLANSAKMQLPTKVIIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNRKLSSVIDEVVISDSGIQYKKVITREYSYNSSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVIDEEVTYDAKNSSYKNIKGFPVLAVEFCGLDKDENTIADYMNFRWVNHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKAKLDINNQTVTTMVYEYNK*
Ga0113885_101001	Ga0113885_1010016	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE*
Ga0113885_101108	Ga0113885_10110810	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0113885_101707	Ga0113885_1017071	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQLWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0113885_101746	Ga0113885_1017466	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPAPQNEKLVLLKELYGEQGRAYFSYKNRNEIESLSAEGGLGKVDINYEYDAYGRIVREFRDWHNYSDADTNITYQYDSQGRLVSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFIENGRVVKSLDENNEVIETIEYLNPKNTLRNIKGFPALVVEFYIRPFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEIEKITVYEKSHNDPTHDNYLFSVSPSRYYIKEE*
Ga0113885_103418	Ga0113885_1034182	F063778	MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED*
Ga0113885_105741	Ga0113885_1057413	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0113885_115588	Ga0113885_1155882	F095632	MRPIKKGMTVSFKETTGYKVVNFVASITASITAGAVVSALCPPAGMALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0113885_120698	Ga0113885_1206981	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0113885_128062	Ga0113885_1280621	F022002	DGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKYEGHVGFKDAYITYSDDELDRARSAEKESEI*