3300008708: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008708
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053319 | Ga0115607
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13595914
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F077781	Metagenome / Metatranscriptome	117	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115607_103915	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	597
Ga0115607_104273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	558
Ga0115607_104662	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	526
Ga0115607_104718	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115607_103915	Ga0115607_1039151	F077781	PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPGAGALSVRTADSLFLGFPRPHPGTPGLGRFRPFLALQSLSETPSHARMPRVTVARPSPETLEISPLRAAT*
Ga0115607_104273	Ga0115607_1042731	F051214	RIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115607_104662	Ga0115607_1046621	F036281	LIKVDEGPVDIYELRMQYLAKLKETDGVMLPKFIYRNKDLFVTEFKPTCDDQWIMYLTNADGLIAKMRIKNGDLMSNGSVLFLAEERKTYTAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREMGHWYTFRMSDDQKSKFTRHTITNEKGHQAYRRGSPD
Ga0115607_104718	Ga0115607_1047181	F081456	PLVIQHYTPTWGIGFSRARKEHTMFEEPLIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLIITAIGALFAAFTVILYTISAE*