3300008694: Planktonic microbial communities from coastal waters of California, USA - Canon-31

Overview

Basic Information

• IMG/M Taxon OID: 3300008694
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126518 | Ga0103929
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-31
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 450215
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F003081	Metagenome / Metatranscriptome	508	Y
F010768	Metagenome / Metatranscriptome	299	Y
F027881	Metagenome / Metatranscriptome	193	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103929_1022	Not Available	1401
Ga0103929_1067	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	963
Ga0103929_1244	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	611
Ga0103929_1373	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103929_1022	Ga0103929_10221	F027881	HKLIIMSLTVARSERVRGVLTHANCTKIKFNLSSVRVSNSLMTFIKFV*
Ga0103929_1067	Ga0103929_10673	F010768	MKEVLNGGYNVHPVPPPNSETKERSARKYERKRTKIEKLFTLGYTTS
Ga0103929_1244	Ga0103929_12441	F003081	MPEPGLVVELREEMFNDTRYGAEVYYMHVRGVDTLMILSYVHILKKIFLKNYVTAESDG*
Ga0103929_1373	Ga0103929_13731	F001478	NKGKVLDIQGNVDAENRNIIVHDAHGRINQQWDIVYVDEWKGEPGKGELNEEFGLYVERPFYVVSQMNDNRYLDLINNRNMVIKIPNGRRTQVWYFHQQSLTIRTRYNNQSWDIKNAGKTNDMQIWSTNSQWF*