3300008691: Planktonic microbial communities from coastal waters of California, USA - Canon-52

Overview

Basic Information

• IMG/M Taxon OID: 3300008691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126533 | Ga0103944
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-52
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2192654
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000123	Metagenome / Metatranscriptome	2053	Y
F003081	Metagenome / Metatranscriptome	508	Y
F004235	Metagenome / Metatranscriptome	447	Y
F048633	Metagenome / Metatranscriptome	148	N
F084730	Metagenome / Metatranscriptome	112	Y
F099434	Metagenome / Metatranscriptome	103	Y
F100952	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103944_10625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197	734
Ga0103944_10727	Not Available	706
Ga0103944_11312	All Organisms → cellular organisms → Bacteria → Proteobacteria	594
Ga0103944_11816	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103944_10625	Ga0103944_106251	F048633	MDINIGDNNMPMKKAMPGGKIVNKGKYKHGGKVHRNKKGHGGVMTIVLKKDKTKKK*
Ga0103944_10727	Ga0103944_107271	F004235	MPIAPNRTVTALIGEQDFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVACTIKTTFKYA*
Ga0103944_10727	Ga0103944_107272	F099434	MPATKNNFSHVTNMELEGVATSTSVVDFINAMTAETGDLSTGSATAGLEATRAVISSYINILSEGPLHESDKQKTY
Ga0103944_11312	Ga0103944_113123	F084730	AVGYFSYLNRIASGVYLYDPSNCIYGYGTPKRALIFFK*
Ga0103944_11781	Ga0103944_117811	F100952	HGRHRGAKQNQRVNPLADNYTGQQISSRFVQPGVMVLNKENTQFMLPWIEKYKDIKDDRIDDGMFLNSCIVDSDVPLLDMDKKFNHKNNGEQFDYNNVYFLHCAGGKKHKRQVKIWDKLKKIYPEVNPDLSGLIQ*
Ga0103944_11816	Ga0103944_118161	F003081	GLVVELREEMFNDTRFGAEVFYMHVRGVDTLMVLSYLHIFKKLYLKNYVTSESDG*
Ga0103944_12225	Ga0103944_122251	F000123	TIVDSISIMAVLAVLALAVTAQGAMLRAAQEPDTACGKGFDNLVGGSQEYYKTASKELWNHPYHLTDAATFEKEFQCWFANMATTKCGGLPSQADARKDKLTEMCKAHNTEWYPIWKMFSDEEVKWFKDSYPALPTEGDVRTVSVGANEARGEADISYKQAMNTVK