3300008682: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053022 | Ga0111556
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151818521
• Sequencing Scaffolds: 23
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F067846	Metagenome	125	Y
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F092231	Metagenome	107	Y
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111556_1000037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	90351
Ga0111556_1000185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44801
Ga0111556_1000252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	38713
Ga0111556_1000856	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	18092
Ga0111556_1001095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	15323
Ga0111556_1002768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	7916
Ga0111556_1003216	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6960
Ga0111556_1004091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	5777
Ga0111556_1004658	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5208
Ga0111556_1005091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	4852
Ga0111556_1006098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4188
Ga0111556_1009217	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2960
Ga0111556_1011001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2529
Ga0111556_1011726	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2385
Ga0111556_1013628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	2072
Ga0111556_1015629	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1817
Ga0111556_1015831	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1793
Ga0111556_1020590	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1387
Ga0111556_1028153	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1012
Ga0111556_1031004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	917
Ga0111556_1035340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	805
Ga0111556_1035581	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	799
Ga0111556_1037044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	766

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111556_1000037	Ga0111556_100003767	F067846	MESLQAQWERKTLSDYDRRCCAEDAYNEAVEREMENIEEDISNGDSDAICAFREKMLDYDEVISAFDDDTFNDDEFIKAVALSTDYEEMRIKILTAMAEDKLEQLEEDYKNGYILND*
Ga0111556_1000185	Ga0111556_100018538	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTATVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0111556_1000252	Ga0111556_100025210	F092231	MIIFLPQDFITWANALMQFPWPIQVDDFVPYAERLGWKPTSLPDEFSVCPDNDDEITILSSDRDGNVRNLFLSMASNETEDAEGAAELNDHFVSCVVAGREAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGRWSVLFNFFTPEGRRQFL*
Ga0111556_1000856	Ga0111556_100085621	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0111556_1001095	Ga0111556_100109517	F030786	MKRTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGVIKVKYFDDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0111556_1002768	Ga0111556_10027684	F063778	MPETISEGAQQQLLHQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*
Ga0111556_1003216	Ga0111556_10032163	F042387	MKRITLFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEAVISDSGIQYKKVVTQEYHYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0111556_1004091	Ga0111556_10040917	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTNIQNNTTWDYITKQVIDIKYSKLNNHLNLKK*
Ga0111556_1004658	Ga0111556_10046584	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYFSEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0111556_1005091	Ga0111556_10050916	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNAYFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIIQIKKRLDNFQQRETAKSLSKLI*
Ga0111556_1006098	Ga0111556_10060982	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLCLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0111556_1009217	Ga0111556_10092173	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINGYNNKEQIEILLSLR*
Ga0111556_1011001	Ga0111556_10110012	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI*
Ga0111556_1011726	Ga0111556_10117265	F064818	KDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0111556_1013628	Ga0111556_10136282	F022002	MMNIYSFLSPSSVGRKIVLAFGILLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGYLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAENENEI*
Ga0111556_1015629	Ga0111556_10156292	F080165	MKNKKFLLAILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0111556_1015831	Ga0111556_10158312	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG*
Ga0111556_1020590	Ga0111556_10205902	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSIANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*
Ga0111556_1028153	Ga0111556_10281532	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKGNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV*
Ga0111556_1031004	Ga0111556_10310043	F070224	VKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAESPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0111556_1035340	Ga0111556_10353401	F041827	FMKHFLSALALGCLLLSCNRDLENNETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPN
Ga0111556_1035581	Ga0111556_10355812	F061927	SLNLFLNYFIMKNSIFILSAMLILGACSNDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAISSCIGE*
Ga0111556_1037044	Ga0111556_10370442	F092231	MIIFSPQDFITWANMLVQFPWPIQLGDFVPYAEQLGWKPTSLPDEFSVRDDEHVTLGDDEAGSICELFLHMASNETEDAEGAAELNDHLVSCVAAGKKAWGEPFLLEAGDGPSVTWRFPGDMFARVASGRWSVLFR