3300008680: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008680
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053017 | Ga0111555
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 200974149
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F046431	Metagenome	151	Y
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F068942	Metagenome	124	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F077404	Metagenome	117	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111555_1000406	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	35363
Ga0111555_1000429	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	34315
Ga0111555_1000617	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	27396
Ga0111555_1001252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17873
Ga0111555_1001746	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	14430
Ga0111555_1002085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12853
Ga0111555_1002735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	10549
Ga0111555_1004464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	7142
Ga0111555_1004882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6612
Ga0111555_1005419	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	6071
Ga0111555_1008646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	4014
Ga0111555_1011251	Not Available	3130
Ga0111555_1012229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2896
Ga0111555_1013826	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2578
Ga0111555_1018499	Not Available	1946
Ga0111555_1019025	Not Available	1890
Ga0111555_1023560	All Organisms → Viruses → Predicted Viral	1524
Ga0111555_1029360	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1218
Ga0111555_1033967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1051
Ga0111555_1042423	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	842
Ga0111555_1043699	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	818
Ga0111555_1050192	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	714

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111555_1000406	Ga0111555_100040611	F071327	MEDLFNSVYSTHKGISFSTVIVFGAFIFLLLQVHLSYKGAISEVLRKTGFFSMMLLYIQGILGVFLGIYSPEFSEASEFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALAAALLFEYAYPWRLIFG*
Ga0111555_1000429	Ga0111555_100042930	F040685	MKKLLFKLFFALAFTSISLHGQERIQQVEFSSFGGMALYSRQYTLNSLKKEFSKKPLMEQNKELPEEISLPNTPENWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0111555_1000429	Ga0111555_100042931	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDKKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWNYITKQVIDIKYSKLYNHLNLEK*
Ga0111555_1000429	Ga0111555_100042933	F047127	MKKTFALILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYIEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK*
Ga0111555_1000617	Ga0111555_100061725	F061926	MIKTAKHIKTFLASMLLIIFVMNVSGLFVRLHHQEETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111555_1001252	Ga0111555_10012525	F061927	MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0111555_1001746	Ga0111555_100174611	F076191	MKIITENPAEEALLWRIKALSDELVDQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDDA*
Ga0111555_1002085	Ga0111555_10020857	F030786	MKRTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNTMGTKKISLTDITEGDDSKEGVIKVKYFDDDGADKIFENNNNIILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0111555_1002735	Ga0111555_10027353	F046431	MKKISRMSITIILILSIIINYGSIIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGTTHFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
Ga0111555_1004464	Ga0111555_10044644	F085821	MNGIFERLAALAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTKRQILEQDNGKHDEAYIDAWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTQNQQELVSETQNHIASLKDLYKKVNKIK*
Ga0111555_1004882	Ga0111555_10048825	F043990	MIKKLGIIFTIGVIILGIVVYANHKIEISWIEGEFGVNMSNMDIDEKYRKEEWAPNGDGEKTIILTYDQLHSSFTKLNKLPIKEGLPPNGIPQQFLNIANGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIF*
Ga0111555_1005419	Ga0111555_10054196	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDIDKYFDSRAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSKTYLTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK*
Ga0111555_1008646	Ga0111555_10086463	F077403	MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWYFMLPDWQASAQLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGQVRGDSIWIEM*
Ga0111555_1011251	Ga0111555_10112514	F070224	MRRLFFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSGQNNLIVRKVGGSLIIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0111555_1012229	Ga0111555_10122294	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSTTDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0111555_1013826	Ga0111555_10138264	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDCHITDCETDEEVTLEHIFRSVI*
Ga0111555_1018499	Ga0111555_10184994	F022002	PPPPAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI*
Ga0111555_1019025	Ga0111555_10190252	F077404	MTCSRSRNPPNTDGSTDHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNLVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0111555_1023560	Ga0111555_10235602	F043991	MSKKNPSVIDYFDLNGDLNQEAYEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGSKHIHPDFRA*
Ga0111555_1029360	Ga0111555_10293602	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLDLWYESNKRLLLEQDKGKHDEAYIDTWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQ*
Ga0111555_1033967	Ga0111555_10339672	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTEQGITDSYKEIVK*
Ga0111555_1042423	Ga0111555_10424232	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTTEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0111555_1043699	Ga0111555_10436992	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSSISFSNNVSTLDTFTRHDIPEVDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAQ*
Ga0111555_1050192	Ga0111555_10501921	F070224	PDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAIGFPEMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRTSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYIDYDHPEAHMIH*