3300008673: Planktonic microbial communities from coastal waters of California, USA - Canon-48

Overview

Basic Information

• IMG/M Taxon OID: 3300008673
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126530 | Ga0103941
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-48
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1807349
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002658	Metagenome / Metatranscriptome	539	Y
F013645	Metagenome / Metatranscriptome	269	Y
F025297	Metagenome / Metatranscriptome	202	Y
F037503	Metagenome / Metatranscriptome	168	Y
F044588	Metagenome / Metatranscriptome	154	Y
F071273	Metagenome / Metatranscriptome	122	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103941_10308	All Organisms → cellular organisms → Bacteria	883
Ga0103941_10739	All Organisms → cellular organisms → Eukaryota → Sar	674
Ga0103941_10749	All Organisms → cellular organisms → Bacteria	671
Ga0103941_11117	Not Available	589
Ga0103941_11220	All Organisms → cellular organisms → Bacteria	571
Ga0103941_11372	Not Available	548

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103941_10308	Ga0103941_103081	F037503	MHLGAASESSVIEVELLIGLGGFTAYQTLINSECYDIYPGVRAWVLRSTSESERTQS*
Ga0103941_10739	Ga0103941_107392	F013645	MNPAFLLGTAFNIAYWHRKYHSGTICKGVSNAQASNALSGCEREETPK*
Ga0103941_10749	Ga0103941_107491	F002658	MAGEAEGGQDADEFADFASRQTFPDGTNMLAMMHNDNYIKKFKTKEIMVTFGNTADGRILLNKLNEMVAKEKGTTVKSMAADPDAP
Ga0103941_11117	Ga0103941_111172	F071273	NTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVACTIKTTFKYA*
Ga0103941_11220	Ga0103941_112201	F037503	MRLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYEIYSGVRAWVIRSMSEREGVDNNRA
Ga0103941_11279	Ga0103941_112791	F025297	QAGTGNTVSGDATQGSDLVLNGNNIILDLIQDGDNNDFFGSLVLDGSGSTVLDFYNLGDGNIFDFDVGDNSADNADMLSSIQGDGNIFDIGIGENAQAESLNFDLVILGSRNDFDTSFTNSKAWAAQGSGESCGTNCTGSSAMVGILIDADNVVWNFDITGDDNDFATKQSGNGGHSLTVDLTGSN
Ga0103941_11372	Ga0103941_113721	F044588	MLLRLLRRIAKVSYDNYEASSLASGSDITIGRIPANATIMDVVLKCDALGGSSTLAVGDSGGADRYLAAVGTWNAAGQTQSMLGGSTAANTAMTGLGYRTTASTDIV