3300008670: Planktonic microbial communities from coastal waters of California, USA - Canon-56

Overview

Basic Information

• IMG/M Taxon OID: 3300008670
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126535 | Ga0103946
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-56
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1581762
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003081	Metagenome / Metatranscriptome	508	Y
F023489	Metagenome / Metatranscriptome	210	Y
F037503	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103946_10038	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1604
Ga0103946_10085	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1292

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103946_10038	Ga0103946_100381	F037503	MYLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYEIYSRVRAWVIRSMSYRAEAMGLKNR*
Ga0103946_10085	Ga0103946_100852	F003081	MFNDTRFGAEVFYMHVRGVDTLMVLSYMHIMKKIYLKNYVTSESDG*
Ga0103946_10829	Ga0103946_108291	F023489	RCDCGANATKIVSATRHILDGASGDFPGRHMKWVREHKYEGQTSKES*