3300008664: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053013 | Ga0111493
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175870299
• Sequencing Scaffolds: 19
• Novel Protein Genes: 19
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis → [Eubacterium] sulci	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F076191	Metagenome	118	N
F077404	Metagenome	117	N
F080165	Metagenome	115	N
F084362	Metagenome	112	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F103430	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111493_100197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis → [Eubacterium] sulci	71345
Ga0111493_100499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39580
Ga0111493_100517	Not Available	38714
Ga0111493_101023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	25221
Ga0111493_101231	All Organisms → cellular organisms → Bacteria	21966
Ga0111493_102684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	11747
Ga0111493_102834	All Organisms → cellular organisms → Bacteria	11184
Ga0111493_108945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	3566
Ga0111493_110324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3021
Ga0111493_112799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2320
Ga0111493_114360	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2009
Ga0111493_115556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1821
Ga0111493_117432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1573
Ga0111493_119506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1368
Ga0111493_122635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1131
Ga0111493_123381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1085
Ga0111493_124450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1027
Ga0111493_128109	Not Available	867
Ga0111493_130096	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	800

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111493_100197	Ga0111493_1001971	F046432	MWEMTENELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQSTNQKYLLMNTYSHHGVKAEVEYYREEGFDNLEAIPRKIETLENVSDANDEIFKYLFGMYSIFEIRSIQ*
Ga0111493_100499	Ga0111493_10049941	F092230	MVDKLKTHLLKVFFPLFIVCIIFVAFFRQIGCGSEGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0111493_100517	Ga0111493_10051735	F084362	MSLMNCTFTVRWSDDKNKPHAKTYTTEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSEADAEQKGFWWQE*
Ga0111493_101023	Ga0111493_10102336	F103430	MIEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0111493_101231	Ga0111493_1012319	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVITAFLLALVVQKIRVLFGGITASVFAVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVSYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIISKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0111493_102684	Ga0111493_1026848	F046432	MQMSESRLSDVISKYQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEMKS*
Ga0111493_102834	Ga0111493_1028349	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYKKPMTCIRSTHDNRELKDVIHLLILAGGNEIPSNHYGVLRNE*
Ga0111493_108945	Ga0111493_1089457	F046431	SVIIAYSNVLVSWAAVDSELTITPKPETNNMHLKWTGPLNSTYRVFQKKPGSNHFETIGLTDFSPEAINEEVKVLNIYPTADNNNTALSASGMAIPNVTVTYLDGQTETIPKSALLKAWMEGRNSK*
Ga0111493_110324	Ga0111493_1103242	F095630	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASLSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI*
Ga0111493_112799	Ga0111493_1127992	F046431	MKIFKKITIVSILLIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDFSADAIDEEVKVLNIYPQEANAEPRLYPELPPTEVRTYHFTEIPKVEVTYLDGTREIIQKSALLKVWMEGRNSKRRRKCN*
Ga0111493_114360	Ga0111493_1143603	F072446	MHEFDAQAQKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRIVTLDCEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER*
Ga0111493_115556	Ga0111493_1155562	F033081	MYPPDLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRLKFSILAVGLIIMTIATIKILLFVPGLNQSVVSLLTRGLETLLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0111493_117432	Ga0111493_1174321	F046431	MLTYAQTLVFAAESELTLTPKPETNNIHLKWTGPLNSSYKVYQKKPGATQFETIGLTDFSPEAIDEEVKVLNIYPTSDYNNAQLSHPYPIPNVTVTYLDGQTETIPKSALLKAWIEGRNSNRGKYSNKF*
Ga0111493_119506	Ga0111493_1195062	F080165	LLLLLSLTACNNKTKTISTLDLEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0111493_122635	Ga0111493_1226352	F095633	MKNYENSTEVGRREGLTEGELRTMGMLAMEATEELKKTTIRKEAVLLGNVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSLEEHSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII*
Ga0111493_123381	Ga0111493_1233811	F046433	MSELSASLDVLDVLNPVTPPDLTLQARDTSRNNPVTYVAEDGYRGTRTSAPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNGLVFLGMSELHFAVTALAKRLRHHLEVDNKPVYVDVGNLLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQIKERIAGFEVDNNPGAHKVSVLVMAASSKYIDNGIGADPLWGKATYPVEAYYRLKNDHDDRGMSRVTGIHSSTDRTFGCEVDDIAYLAIDGGILKGERIDRLTLPALVNIVRPYRNGE
Ga0111493_124450	Ga0111493_1244502	F068942	MIRKILSLPTLALCFTLGSALFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*
Ga0111493_128109	Ga0111493_1281091	F077404	NTKNPFAMNILKTAFAFFFALCFMMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMAGYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ*
Ga0111493_130096	Ga0111493_1300962	F094007	MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAVNACEACPLKLDCELYGKLGEAVLNNAIDYKRVRTATSLTKAGKKRSGWNKGCIDNDA*