3300008652: Microbial communities of saline water collected from the North Sea in Germany - HE327_15

Overview

Basic Information

• IMG/M Taxon OID: 3300008652
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117953 | Gp0126213 | Ga0103624
• Sample Name: Microbial communities of saline water collected from the North Sea in Germany - HE327_15
• Sequencing Status: Permanent Draft
• Sequencing Center: Goettingen Genomics Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4177836
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Saline Water Collected From The North Sea In Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Sea, Germany
• Coordinates
  • Lat. (^o): 54.449
  • Long. (^o): 8.22
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002258	Metagenome / Metatranscriptome	577	Y
F064579	Metagenome / Metatranscriptome	128	N
F101275	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103624_100005	All Organisms → Viruses → Predicted Viral	4277
Ga0103624_100323	Not Available	746
Ga0103624_100377	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica	710

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103624_100005	Ga0103624_1000052	F064579	LLSSALQASEKDDLLNTSSDIVNQITTGVTLVGAATEYAYQGDALSSGTLSTTAHISEAQVDAYNQALDNFVNNYQPYGDVKAVLENKAMGELELMDEAIGRFTEAVVDMSTVLQVNERIEEAVTPQQEAEVQTFVTESASVLQVEQETVDTYNQSVDEIETHANNASAYLAVAGSEEAVAFLEQGIENANTTAEQTNIFYDANAQWVAMGYNTTRNLTAVYLNGNDNMGLDLYITEADILAAGSESEFFKTSPVSQGYKCFMYNEGCNEL*
Ga0103624_100323	Ga0103624_1003232	F101275	MTRLLGIFKSLGCFLLLSDVEPFKYEYRIGLETLVVRTLNQWALHVGELTPARTLTLKCLAWGVWLQRLNLNRLAGVCLNGG
Ga0103624_100377	Ga0103624_1003771	F002258	SIKLSNPSLRKMMLLMLLVPCVLGGTPMPRDPIDVKPLGSGTGNDQYKPIDDAYYTPNEVYKAGDKDDCHPVEKVVYADECVPYVEKTCYTQQKELCKDVFEKNCTAVIDEFEERECFDVTELVCQLAETIQYEMVEEQYTVQRCTKVNDRVCDTVYDLAVTTKDDFQCVDIEHQYCWEEEKVVKDRTCIFSVDFDCGKYQPKDGKGSVTCQKVPTKKCYDTPRKVKEELCQPRTS