3300008645: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008645
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052997 | Ga0111425
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135064643
• Sequencing Scaffolds: 13
• Novel Protein Genes: 17
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F047127	Metagenome	150	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F070224	Metagenome	123	N
F071329	Metagenome	122	N
F097527	Metagenome	104	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111425_101488	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	11718
Ga0111425_103430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	6575
Ga0111425_104285	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5477
Ga0111425_104483	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5276
Ga0111425_105604	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4320
Ga0111425_108906	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2831
Ga0111425_125175	Not Available	987
Ga0111425_129731	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	832
Ga0111425_130394	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	814
Ga0111425_130850	Not Available	802
Ga0111425_135068	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	703
Ga0111425_135390	Not Available	696
Ga0111425_140361	Not Available	611

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111425_101488	Ga0111425_1014885	F041827	LSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0111425_103430	Ga0111425_1034301	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGH
Ga0111425_103890	Ga0111425_1038906	F041827	VGKSDIDYEYDTYGRIIKERRFSYNHTQNFETNITYQYDGQGRITSSHAISSKKHPACSVERKHTYTYQGNKVIVKIERGADNCSSTPKAAKEKTITLFVENGRVVKSLNENNEIIETIEYLNTKNALRNIKGFPALVAEFYIREFTYELPFYNGIEHIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0111425_104285	Ga0111425_1042855	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQNKDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSEQAVDGQDAVIIIKTDKKTYRKMNASGNDHDREVWYGLLQIIAKEFGKKGVYE*
Ga0111425_104483	Ga0111425_1044833	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRAVYSSRYTLNSLKKEFSTKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKELREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIITKEFGKKGIYE*
Ga0111425_104483	Ga0111425_1044835	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0111425_104483	Ga0111425_1044838	F047127	MKKTFAFILLIIISLVKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0111425_105604	Ga0111425_1056044	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPYENSQEYKIFNDFCAKSNEHLNDDDGYIFYKLTDEKSATDLNEAIISEFQEDIGNYILLQNLILEDNQLXXXXNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0111425_108906	Ga0111425_1089061	F061927	FFSLNLFLNYIIMKNPIFILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*
Ga0111425_108906	Ga0111425_1089065	F058221	DLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0111425_125175	Ga0111425_1251751	F022002	QDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKSIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0111425_129731	Ga0111425_1297311	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTSVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKDY
Ga0111425_130394	Ga0111425_1303941	F071329	ASETRGNMRPRYSKGILMLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED*
Ga0111425_130850	Ga0111425_1308502	F061925	TNIRNNPMSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0111425_135068	Ga0111425_1350681	F058221	FTMKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLAQNASFLANKFLLPSLEAGSAKLLTNVLLKKVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0111425_135390	Ga0111425_1353902	F022002	NRTISGLTLGVTTPAQARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELDRARSAEKESEI*
Ga0111425_140361	Ga0111425_1403611	F070224	IYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*