3300008644: Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-50

Overview

Basic Information

• IMG/M Taxon OID: 3300008644
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117952 | Gp0126197 | Ga0103608
• Sample Name: Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-50
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34277879
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Hydrothermal Vents In Mid Cayman Rise, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Microbial Communities From Hydrothermal Vents In Mid Cayman Rise, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010686	Metagenome / Metatranscriptome	300	Y
F025846	Metagenome / Metatranscriptome	200	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103608_1000730	All Organisms → Viruses → Predicted Viral	1499
Ga0103608_1004060	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	715
Ga0103608_1005149	All Organisms → cellular organisms → Bacteria	638
Ga0103608_1007676	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103608_1000730	Ga0103608_10007303	F025846	MASVSMPHGSVMDMQTVQMVVMKLTVLLHHVKTRVYGIVVMDNASLHPMYVMAQVNFVTQAGLLTVPMVQMKA*
Ga0103608_1004060	Ga0103608_10040603	F025846	VNLTVAMDLVSMAPGHVTAMVTVLMAQMKLTVLLHHVKTKVYGIVAMANVFQHHMYVMDQVNFVMQVGVLTVLMAQMKA*
Ga0103608_1005149	Ga0103608_10051491	F010686	TGGTGRGRNHCGQATKGVWGMSWRQKAMKGAEGCEKPGEAVKRALIPGFLNYVALNT*
Ga0103608_1007676	Ga0103608_10076762	F025846	MAVHMVSVFMRAGPVMAQQTAMMAQMKQTVLLHHVKTKVYGIVVMDNVFQHPMYVMAQVNFVTQAGLQTVPMAQMKA*