3300008638: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763435843 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008638
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052990 | Ga0111421
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763435843 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138250690
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F032313	Metagenome	180	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F046431	Metagenome	151	Y
F072446	Metagenome	121	N
F085820	Metagenome	111	N
F090516	Metagenome	108	N
F092230	Metagenome	107	N
F097490	Metagenome	104	N
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111421_100029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	147544
Ga0111421_100042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	121160
Ga0111421_100050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	109950
Ga0111421_100181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	55941
Ga0111421_100288	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	40898
Ga0111421_100770	All Organisms → cellular organisms → Bacteria	21081
Ga0111421_100870	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19097
Ga0111421_100963	All Organisms → cellular organisms → Bacteria	17610
Ga0111421_106275	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3778
Ga0111421_107211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	3309
Ga0111421_117887	Not Available	1337
Ga0111421_125123	All Organisms → cellular organisms → Bacteria → Terrabacteria group	929

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111421_100029	Ga0111421_100029238	F046431	MKIFKKITIVSILLIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNHFETIGLTDFSADAIDEEVKVLNVYPTNHPIYATPNVHVRYLDGQTEVIPKTALLKVWMEGRYCNRGK*
Ga0111421_100042	Ga0111421_10004275	F097490	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111421_100050	Ga0111421_10005089	F046431	MKILKKITVVSILLIIMLTYIQTLVFAAESELTLTPKPETNNIHLKWTGPLNSSYKVYQKKPGASDFETIGLTDFSADAIDEEVKVLNIYPQEANAEPRLYPELPPTEVRTYHFTEIPKVEVTYLDGTREIIQKSALLKVWMEGRNSKRRRKCN*
Ga0111421_100181	Ga0111421_1001811	F041827	LSVLALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSIEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0111421_100181	Ga0111421_1001816	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0111421_100288	Ga0111421_10028828	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSTAKGGSATGAKKISLADITGGDNSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0111421_100770	Ga0111421_10077034	F046431	MKIFKKITIVSILLIIILTYIQTLVFAGESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFSPEAIEEEVKVLNVYPHSKNESQSAYPGSHAFQTLPNVNVTYLDGSTETIEKPALLKVWMEGRNSK*
Ga0111421_100870	Ga0111421_10087017	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTSDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPEDTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0111421_100963	Ga0111421_10096311	F092230	VDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEGGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTDEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0111421_106275	Ga0111421_1062754	F032313	MNFMSNCNWRAQSVSIESFKIVLMYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0111421_106275	Ga0111421_1062755	F032313	MACDNDTPQEKPREQEKHEVPVPKPKPQFDELGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDFCAVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK*
Ga0111421_107211	Ga0111421_1072112	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPERTTYRVPVIPRSVEDKTEKEYNDMDLGKEAHLVFRATVHGDTINRQKRELEAISRQLNALALTSIGTSPVLCGVKSIEAVGIAENGNTYDLRAEMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLGSIREDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTTLWPLPDYKYNEREW*
Ga0111421_117887	Ga0111421_1178872	F085820	MLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFVKPLGETVEADYLWLPGGDGF
Ga0111421_125123	Ga0111421_1251232	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFITIPAAGGEPAR