3300008632: Human saliva microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008632
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052989 | Ga0111368
• Sample Name: Human saliva microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61069668
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F058221	Metagenome	135	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111368_100092	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9494
Ga0111368_100701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4809
Ga0111368_106597	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1593
Ga0111368_108778	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1319
Ga0111368_110959	Not Available	1138
Ga0111368_122655	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	674
Ga0111368_125503	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	618

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111368_100092	Ga0111368_1000924	F040149	VADEGAEELRWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLTPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0111368_100701	Ga0111368_1007014	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGRLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0111368_106597	Ga0111368_1065972	F068942	MIRKILSLPTLALCLTLGSALFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFSEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPGTYIFNVRQ
Ga0111368_108778	Ga0111368_1087782	F047508	MLGHRLVEGRVKYPYLRCIGEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATIEDQDFHKVLYYMVRCELILSSP*
Ga0111368_110959	Ga0111368_1109591	F072446	FRPRQVLQARHERIHAPLGGGLPLPAAARRRATLSGALSRFLRGSVVFRLAPHTARQAGREHHKKQRTLPVNAMHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALTLPTIGTSPVLCGVKSIKSVGVAENGRTYDLSWEMKLRIRDYSSRRKYNSGRIVTLDCEDTESMTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVLEKEIER
Ga0111368_122655	Ga0111368_1226551	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNVVTEKYLGGMMDYSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSL
Ga0111368_125503	Ga0111368_1255031	F047127	TKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*