3300008614: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008614
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053316 | Ga0115604
• Sample Name: Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68003000
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga granulosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054111	Metagenome	140	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115604_1028136	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga granulosa	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115604_1028136	Ga0115604_10281362	F054111	MNKPLESITHKEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTLKIKWDLDYGLSLETKALSTSDKDLFLNILHKEILSLENQ*