3300008613: Planktonic microbial communities from coastal waters of California, USA - Canon-4

Overview

Basic Information

• IMG/M Taxon OID: 3300008613
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126503 | Ga0103914
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-4
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2865143
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → Viruses → Predicted Viral	2
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F026579	Metagenome / Metatranscriptome	197	N
F037503	Metagenome / Metatranscriptome	168	Y
F040855	Metagenome / Metatranscriptome	161	N
F054876	Metagenome / Metatranscriptome	139	N
F068862	Metatranscriptome	124	N
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103914_10166	All Organisms → cellular organisms → Bacteria	1470
Ga0103914_10352	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1186
Ga0103914_10368	All Organisms → Viruses → Predicted Viral	1177
Ga0103914_10510	All Organisms → Viruses → Predicted Viral	1080
Ga0103914_11700	Not Available	753
Ga0103914_12091	Not Available	700
Ga0103914_12672	Not Available	642

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103914_10166	Ga0103914_101661	F037503	MHLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYEIYSGVRACVLRSMSERERTQTIS*
Ga0103914_10352	Ga0103914_103521	F003081	MPEPGLVVELREEMFNDTRFGVEVFYMHVRGVDSLMVLSYMHIMKKIYLKNYISAESDG*
Ga0103914_10368	Ga0103914_103681	F054876	KHTPGNRYFYLIAFTITYSGIILAFWATLGYRIFGKAYAGLGPQQTLTRYRIRRVAVGMVAALFIQFANCTPEALVVYHFDSLFTYTPFEQFKHHKTRGYIWEPVTNGSIGFSRQSTRTTNKQGILMDQEEKADITHKSMWNNQVRYDECNQTRERELDNDEWNEEASFHEFGGVNQATLHARLVPFNLYMVPKWERQENKDFVLTLRKIRDEMDEKLLSSGNSYAQNASLPFSDEWDVELDYIINPSALAEKAESKGAYKDMQKFIRSTKWTSNHLHLGNGFDTEASYAKLHKLPAEVRLPWHYPAVKPLETKFLPPASRQTPEEIESLNQQIQANAEFLANEPDRIQPDIYRRLSEYRMSRKTTPRSFDAEREARLKAESEFRRPTYSIS
Ga0103914_10510	Ga0103914_105101	F068862	QYLIFNTMLYKFFIALATLLVVNANAPSDRSVHISTNTDVDGLNGLNLNWLVTFKVDDYVVGFRYMLNELKKYPESRFAKNTFDVADGEATVDADVNVDDKSLSANVKWVSDKLVDGMKTTLNFNGNSNDKITSVGAAVNKTVDGHDVELKGTYNIGDSRLDANGKVVVDKTTAEVSYNSGDEDIRLQLSHNLDDSNSPKGSYSTKTGQVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGNQGDWKTRAEVPLANNEIGNSKVTIKREWKY*
Ga0103914_11700	Ga0103914_117001	F097458	RSYKLPPIFLSLTFAALLPRRDIYALAFTPKLDLKHIISIDSWYKLLGSPILFDTYTLMVRRQTEPIVNCRGT*
Ga0103914_11861	Ga0103914_118611	F000237	MIFHYFTPFYYIYLVKMHVLFCHES*DSDSGETTYEDKSGTYVS*FYDAFLKEIQDA*Y*VLYVYVYFFIHHFEGVTVNYFFFER*NIAELDEIRFYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQTSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*IVHHLDLIDHYIFKFTQVLLRKLQSNKLTTTRA
Ga0103914_12071	Ga0103914_120711	F000237	A*YYIYLVKLHVLFCHES*DSDSGENTYEDKTGTYVS*FYDAFLKEIQDAWY*VLYIYVYFFLHHFNGSTINYFFFER*NIAELDEIRFYGVAPH*YFRPYMGLLVISPTHYEGLM*MGLFLGSLAFLPVIYNVYNAMHKYVATIPMQNSILLTSAFIFSMLSLLCANSMLPCRRYYYEPEGGYVGNP*VKFSFQYMYLYLC*ILHHLDLIDHYIFYLTQTFLRKLTLDLNPS
Ga0103914_12091	Ga0103914_120913	F026579	RQDMKMNLIVLMLAIMAISVSQPSFSKTVSEAKIIFADEEGEGSPTDEEPDCE*
Ga0103914_12672	Ga0103914_126721	F040855	TNNELIKNGSEKNMELRPYYDRPTGQIKNYLSLIEQKIASNFPHWGRGSQGVWPKGDYGKGILRADQFSILGTYGQWLIPSSGSSGNQSSASVDSYG*