Sample 3300008607

Overview

Basic Information
IMG/M Taxon OID	3300008607 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052970 \| Ga0111136
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	99602943
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F046433	Metagenome	151	N
F051212	Metagenome	144	N
F058221	Metagenome	135	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F068942	Metagenome	124	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F097527	Metagenome	104	N
F099454	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F041827

Metagenome

159

F043990

Metagenome

155

F046433

Metagenome

151

F051212

Metagenome

144

F058221

Metagenome

135

F066860

Metagenome

126

F067847

Metagenome

125

F068942

Metagenome

124

F089056

Metagenome

109

F090516

Metagenome

108

F097527

Metagenome

104

F099454

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111136_101922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	8031	Open in IMG/M
Ga0111136_104888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	4289	Open in IMG/M
Ga0111136_107654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2913	Open in IMG/M
Ga0111136_112421	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1814	Open in IMG/M
Ga0111136_115599	All Organisms → Viruses → Predicted Viral	1426	Open in IMG/M
Ga0111136_115894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1400	Open in IMG/M
Ga0111136_115917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1398	Open in IMG/M
Ga0111136_119725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1106	Open in IMG/M
Ga0111136_120318	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1066	Open in IMG/M
Ga0111136_122553	Not Available	943	Open in IMG/M
Ga0111136_122977	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	923	Open in IMG/M
Ga0111136_127564	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	743	Open in IMG/M
Ga0111136_127872	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	733	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0111136_101922

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis

8031

Open in IMG/M

Ga0111136_104888

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense

4289

Open in IMG/M

Ga0111136_107654

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.

2913

Open in IMG/M

Ga0111136_112421

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

1814

Open in IMG/M

Ga0111136_115599

All Organisms → Viruses → Predicted Viral

1426

Open in IMG/M

Ga0111136_115894

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1400

Open in IMG/M

Ga0111136_115917

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

1398

Open in IMG/M

Ga0111136_119725

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

1106

Open in IMG/M

Ga0111136_120318

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

1066

Open in IMG/M

Ga0111136_122553

Not Available

943

Open in IMG/M

Ga0111136_122977

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

923

Open in IMG/M

Ga0111136_127564

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

743

Open in IMG/M

Ga0111136_127872

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

733

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0111136_101922	Ga0111136_1019224	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0111136_104888	Ga0111136_1048882	F043990	MIKKFGIIFIFGVIILGIAVYTNHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIF*
Ga0111136_107654	Ga0111136_1076543	F067847	MFSHIVRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQ
Ga0111136_112421	Ga0111136_1124212	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTPDEYEGVSAAMAEMMEYSYKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0111136_115599	Ga0111136_1155991	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAGPG
Ga0111136_115894	Ga0111136_1158943	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAGPGGTPHT
Ga0111136_115917	Ga0111136_1159173	F089056	MNIFCKIILPLLCIISCSKRKEADNTMVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGIPNRRFKDKEEIVFMYYINSCCDNGLLLEECDICFIAI
Ga0111136_119725	Ga0111136_1197252	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQANKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0111136_120318	Ga0111136_1203182	F058221	MGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0111136_122553	Ga0111136_1225531	F068942	MIRKILSLPTLALCFTLGSAFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTRQPKQFKFSVSVNPPATYFFNVRQPALPAKAQETTVMHRSLPSD
Ga0111136_122977	Ga0111136_1229771	F041827	RDLENNETPAPQNEKLVLLKQLSEGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETAKEKTITLFVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALAVEFYIRPITYELPYYNHGIERIKDLRYIDNVKIIDLHEDDYMLYKYDDDKGNSYDGDYPTDIFVFDKSHNDPTYSHQLWMFNASRYYIKEE*
Ga0111136_127564	Ga0111136_1275641	F099454	THKPKTHSGIKTLMKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0111136_127872	Ga0111136_1278721	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE*

Scaffold ID

Protein ID

Family

Sequence

Ga0111136_101922

Ga0111136_1019224

F046433

MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*

Ga0111136_104888

Ga0111136_1048882

F043990

MIKKFGIIFIFGVIILGIAVYTNHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIF*

Ga0111136_107654

Ga0111136_1076543

F067847

MFSHIVRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQ

Ga0111136_112421

Ga0111136_1124212

F090516

MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTPDEYEGVSAAMAEMMEYSYKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*

Ga0111136_115599

Ga0111136_1155991

F097527

MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAGPG

Ga0111136_115894

Ga0111136_1158943

F097527

MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAGPGGTPHT

Ga0111136_115917

Ga0111136_1159173

F089056

MNIFCKIILPLLCIISCSKRKEADNTMVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGIPNRRFKDKEEIVFMYYINSCCDNGLLLEECDICFIAI

Ga0111136_119725

Ga0111136_1197252

F051212

MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQANKTWDYITKQIIDIKYSQLNNHLNLEK*

Ga0111136_120318

Ga0111136_1203182

F058221

MGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*

Ga0111136_122553

Ga0111136_1225531

F068942

MIRKILSLPTLALCFTLGSAFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTRQPKQFKFSVSVNPPATYFFNVRQPALPAKAQETTVMHRSLPSD

Ga0111136_122977

Ga0111136_1229771

F041827

RDLENNETPAPQNEKLVLLKQLSEGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETAKEKTITLFVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALAVEFYIRPITYELPYYNHGIERIKDLRYIDNVKIIDLHEDDYMLYKYDDDKGNSYDGDYPTDIFVFDKSHNDPTYSHQLWMFNASRYYIKEE*

Ga0111136_127564

Ga0111136_1275641

F099454

THKPKTHSGIKTLMKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*

Ga0111136_127872

Ga0111136_1278721

F066860

MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008607: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences