3300008604: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008604
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052969 | Ga0111094
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60930174
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F046431	Metagenome	151	Y
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F103431	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111094_100022	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42972
Ga0111094_100062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus	25974
Ga0111094_105222	Not Available	1757
Ga0111094_106396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1526
Ga0111094_113907	Not Available	855
Ga0111094_115853	Not Available	775
Ga0111094_126123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111094_100022	Ga0111094_10002234	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF*
Ga0111094_100062	Ga0111094_10006226	F046431	LFTIITYIQNLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVPIAGYNTPDVNVTYLDGSSETIPKTALLKAWMEGRNSK*
Ga0111094_105222	Ga0111094_1052222	F055792	MEIASQALDSTPAVAHRILLLTTQLGESLLASFGAEDGVITEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLTCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0111094_105222	Ga0111094_1052223	F040149	VADEGAEELRWEVLIKEQSIPVLFVEVEAWYDGRVSSSEILGSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSIPKGHTLTAVRERETVVAQLLNIHRMF*
Ga0111094_106396	Ga0111094_1063962	F103431	MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0111094_113907	Ga0111094_1139071	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLR
Ga0111094_115853	Ga0111094_1158531	F105378	KVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPITMQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPLFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0111094_126123	Ga0111094_1261232	F051213	KLLWAVIVAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE*