3300008602: Planktonic microbial communities from coastal waters of California, USA - Canon-10

Overview

Basic Information

• IMG/M Taxon OID: 3300008602
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126507 | Ga0103918
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-10
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1233185
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029117	Metatranscriptome	189	Y
F031514	Metagenome / Metatranscriptome	182	Y
F085742	Metagenome / Metatranscriptome	111	Y
F090440	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103918_10776	Not Available	754
Ga0103918_11144	Not Available	655
Ga0103918_11302	Not Available	552

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103918_10776	Ga0103918_107761	F085742	VNSSNNKLLEVKSSRDEEGQAVGVLARKGGNPANQRWKIVYLDKAEAIRTKGFNKEFGFHINRPFYLRSRMPMQRIAECHGANNVWLKRWRKNVAAQQWYFDEVSKTLKNNYWKSHSLDIQSNGGSTNIRCTTTNSRWWWMLRYQAAIII
Ga0103918_10776	Ga0103918_107762	F031514	EPGKGELNEKFGLYVERPFHIVSQLPDNRYIDLINNRNMVIKTPNGRKTQVWYFHQQSKTIRTRYNNQSCDIKSAGTTQDMHIWSTNSGWLHIFTF*
Ga0103918_11144	Ga0103918_111441	F029117	MKSLIASACLLINSHAVVEETSLMQGLVARRGQISPEATSRKDATAKLMETATKMMKNGATPDVITFIETTITEVNRDVLGVIVNEHNTDQQLINDILARFDAAIAAMEECAASITQQHTDRETASTNHQL*
Ga0103918_11302	Ga0103918_113022	F090440	PSLGGNEISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*