3300008590: Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Powermax_2a

Overview

Basic Information

• IMG/M Taxon OID: 3300008590
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117956 | Gp0126232 | Ga0103643
• Sample Name: Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Powermax_2a
• Sequencing Status: Permanent Draft
• Sequencing Center: Auburn University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6620593
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Corn And Soybean Rhizosphere Soil From Ohio, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities Of Corn And Soybean Rhizosphere Soil From Ohio, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Ohio, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001679	Metagenome / Metatranscriptome	653	Y
F005095	Metagenome / Metatranscriptome	412	Y
F010686	Metagenome / Metatranscriptome	300	Y
F052605	Metagenome / Metatranscriptome	142	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103643_100364	Not Available	626
Ga0103643_100633	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	566
Ga0103643_100704	Not Available	553
Ga0103643_100839	Not Available	528
Ga0103643_100990	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103643_100364	Ga0103643_1003641	F005095	KQWYQRRVLGEYINRPLRGHTVKERTMAENAAIWKLHLIYRLSHIPERFDADVRGKVRALEGVSEVDVAPSHDASTRLTFSTPYAHAVIAAVAAKQCLQETIDAHNATGWWWQRKVQLIDEPAVRKVA*
Ga0103643_100633	Ga0103643_1006331	F010686	AVVSTQSTWGGQATKGVWGMPRRQEAKKGVEDCDKPGGLVKRELIPGSLNQHVVNP*
Ga0103643_100704	Ga0103643_1007041	F052605	IERTKRAAESKMEVARFKIIPGDWGKVGSGWLPRLLQTAPQGATEAEFTSSSGGVRTPSNANEGLGSKQRSETAAS*
Ga0103643_100839	Ga0103643_1008392	F010686	QCGQATKGVWGMSWRQEAKKGVEDCDKPGGMVKRVLIPGSLNERVLNS*
Ga0103643_100990	Ga0103643_1009902	F001679	MSRRQQAKKGVKDCEKPGGVVNQALIPGYPNGRQLNP*