3300008586: Planktonic microbial communities from coastal waters of California, USA - Canon-17

Overview

Basic Information

• IMG/M Taxon OID: 3300008586
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126511 | Ga0103922
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-17
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6820322
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F010914	Metagenome / Metatranscriptome	297	Y
F011139	Metagenome / Metatranscriptome	294	Y
F011936	Metagenome / Metatranscriptome	285	Y
F019484	Metagenome / Metatranscriptome	229	Y
F021533	Metagenome / Metatranscriptome	218	Y
F026579	Metagenome / Metatranscriptome	197	N
F027881	Metagenome / Metatranscriptome	193	Y
F037503	Metagenome / Metatranscriptome	168	Y
F043390	Metagenome / Metatranscriptome	156	N
F048174	Metagenome / Metatranscriptome	148	Y
F051069	Metagenome / Metatranscriptome	144	N
F051119	Metagenome / Metatranscriptome	144	N
F051872	Metagenome / Metatranscriptome	143	N
F055725	Metagenome / Metatranscriptome	138	Y
F058997	Metagenome / Metatranscriptome	134	N
F074036	Metagenome / Metatranscriptome	120	N
F074867	Metagenome / Metatranscriptome	119	N
F075867	Metagenome / Metatranscriptome	118	N
F078696	Metagenome / Metatranscriptome	116	N
F101016	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103922_10151	Not Available	2095
Ga0103922_10217	All Organisms → cellular organisms → Bacteria	1882
Ga0103922_10243	All Organisms → Viruses → Predicted Viral	1798
Ga0103922_10436	Not Available	1514
Ga0103922_10508	Not Available	1446
Ga0103922_10743	All Organisms → Viruses → Predicted Viral	1278
Ga0103922_10942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1185
Ga0103922_11439	Not Available	1049
Ga0103922_12032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	947
Ga0103922_12230	All Organisms → cellular organisms → Bacteria	918
Ga0103922_12864	Not Available	850
Ga0103922_13217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	822
Ga0103922_13505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	799
Ga0103922_14556	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	731
Ga0103922_14867	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	713
Ga0103922_15086	Not Available	702
Ga0103922_15121	Not Available	700
Ga0103922_15250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	694
Ga0103922_15916	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	663

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103922_10151	Ga0103922_101515	F075867	MKTTLKPSTTHFLQYDAATSENEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0103922_10151	Ga0103922_101517	F048174	MSDVGQLNSIDVHSHSEGVDSLLNAEIARLKDDLDRRHRERDSYQRQCSVMVEEMTDWEAESKRLDWMVKNRGRIEWEFGGNCYVTFMHKNEFKATLGSDATRVEIDRAMEMCK*
Ga0103922_10217	Ga0103922_102173	F011936	MRGYRCAFARRRRRKIRGVDLLEQLHETRLQKLENGHDMLSRDYSRLNDAIVEISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK*
Ga0103922_10243	Ga0103922_102433	F101016	MEAESKARLENAQVKKTEAEALKTMADVEVMYNDAQKRQADQLLEELTALPAALPTSEELMNEQSIDSGEGEQGRLQPMVGQSSDQGDDGAFNERMFEPEPTEQPTAPIDIGSGELPTGQGVGVDGGIGLQGVTNGDMQEGV*
Ga0103922_10436	Ga0103922_104362	F010914	MIYNILVEQNGKFVATGETVECEFEETQEVIDELQAERGCCCALEAVSE*
Ga0103922_10508	Ga0103922_105081	F019484	FYFLTILGGSLKKIAVKITTNVPISRKVYTNASII*
Ga0103922_10743	Ga0103922_107431	F058997	MIIYKGQQMTVREACKLMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKHSQE*
Ga0103922_10743	Ga0103922_107432	F055725	MANFNGCGIDLKTITELAAQGLSLNSMSKVTGHSKNGIKAALERNNIPYTMGVKERYITVDGVLMSLGDACNAQGFSRQSMYAWRVKRGLNEQEGFDAYVIYKESKRTIDKPILTFKNATVLYKKERYTLDAISDKLKLNKSHFEMFMRHNRYGHNAFERYCWMRGL*
Ga0103922_10942	Ga0103922_109421	F051119	MTIKEAFEQLDALRVANALGLEYDTVCKWRDRKPIPAYWRVKFVNLMNHHNVAIKLHDLAGWIK*
Ga0103922_11439	Ga0103922_114392	F027881	TVARSERVRGVLTHANCTKIKFNLSSVRVSNSLMTFIKFV*
Ga0103922_11691	Ga0103922_116911	F000237	DG*LLGGYAFF*FHYIIALGISLSATHLSDLTLTIIANIF*SVLNNIYTTYYIIFTDMHLNVDQLSRLMITHHTTTCDYRSLAPLHILVWHET*DTDSGEYTYEDKSGSYVS*FYDAFMKEIQDASY*VLYVFVYFSLHHFNGATVNFFFFER*NIAELDEIRFYGVAPH*YFLPLMGILVISPTHYEGLMWMGLWFVLLAALPVIYNCYNVFHKYVSAIPMHYSLLQTSWVVFSMMSLYCTASMLPCDRYYYDPEGGYVGNP*VKMSYQFCYLYLGWMIHHLDLFDHYIFQFSQTLMRKSSSYSYRTLFARTASASDDTPTEVFEK*
Ga0103922_12032	Ga0103922_120322	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANGRKFSNWWNRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103922_12032	Ga0103922_120323	F078696	MKLWSSAVTYLNVQPSEAWNLTPFEFWALWDTHLEKMEISTGKAYTRPMTMDECNELSDFLDELHGDN*
Ga0103922_12230	Ga0103922_122301	F037503	GKGLGGFTAYQPLTNSECHDIAAAVRLWVLRSVAKRETTQTII*
Ga0103922_12864	Ga0103922_128641	F026579	SWRQDMKMNLIVLMLAIMAISVSQPSFSKTVSEVKIIFADEEGEGSPTDEEPDCE*
Ga0103922_13217	Ga0103922_132172	F051069	MAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPFIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDEALKTAIMELTSYRFYNRGNLEAAKIPASVL
Ga0103922_13505	Ga0103922_135051	F043390	MMSYQVKTEDLTKVISLTLTAEQLETIAGALEMYCIGLAEHNDPHLKYAADAQNVIINALESNFGIDG*
Ga0103922_14556	Ga0103922_145562	F011139	MGLFLGSLAFLPVIYNVYNAMHKYVATIPMQNSILQTSAFIFFMLSLFCANSMLPCGRYYYEPEGGYVGNP*
Ga0103922_14867	Ga0103922_148671	F003081	MLEPGLVVELREEMFNDTRFGVEVFYMHVRGVDSLMVLSYMHIMKKIYLISYISAESDG*
Ga0103922_15086	Ga0103922_150862	F051872	KQAAIDQDFDAIDALLAERDRLMKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAERDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVAALKGKLKSPDVTPRTAERPRVASASESSLDPASRNIYNKMISQGLLKTAAEKNAFIKDALGA*
Ga0103922_15121	Ga0103922_151212	F074036	ESDRQEMGNAAVADDDKRRNRWVAFNMVDKIRWHLLSGMSSGKLAQVDLENLNKRS*
Ga0103922_15250	Ga0103922_152502	F021533	MKTIAATVINEVITPAEPLPTAANMILFNGTEYLIYEDGDELPVGE*
Ga0103922_15916	Ga0103922_159162	F003081	MPEPGLVVELREEMFNDTRFGAECFYMHVRGVDSLMLLSYMHILSQIYLSYYVVAHADA*